HsaINT1014796 @ hg38
Intron Retention
Gene
ENSG00000160360 | GPSM1
Description
G-protein signaling modulator 1 [Source:HGNC Symbol;Acc:HGNC:17858]
Coordinates
chr9:136340870-136348767:+
Coord C1 exon
chr9:136340870-136340993
Coord A exon
chr9:136340994-136348696
Coord C2 exon
chr9:136348697-136348767
Length
7703 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CCGGGTCCCTCTGTCTTCAGGGG
3' ss Score
10
Exon sequences
Seq C1 exon
ATCGGGGACCGCCATGGGGAGCTCACGGCCCGCATGAACGTGGCGCAGCTGCAGCTGGTGCTCGGCCGCCTGACCAGCCCGGCAGCCTCAGAGAAGCCTGACCTGGCCGGCTATGAGGCCCAGG
Seq A exon
GTGAGTTCCAGGGTTGTGGGGGGGTCTTGCTCCCCACAGGCACGGACCGCATCAGGAGCTGCGGAGGGGTGGGATCGAGGCCAGGCCAGCATGGCGGAGGTGGCAGCCGCCAGAAAATGGCGCCTACAAGCCAGTTCTTCTTGGCCTCAGGGACAGCACAGGCCTGAGGTTCACCCTGAGCCCTTCCCACCCGCATCCTGAGTGGCGCTGCAGGGCTGCTGGATGAAGGACAGGAGGTGGTCGCCTGTTGCCCCACTGGCTGCTCCAGGGCCTCCACCCCCACCTCCCCCTGGAGCCCTCGGTGCAGGGAGGGCTTCTGTCCTCAGACCCAAGTAGGAGAGGGCTGCTGGGAGGCGAGAGGGCATCAGCCAGAGGGCTGGGCTGGGCTGGGCTGGGCTGGGCTGTGGGAGCCCTATGTGCCTGGGGCAGTAATCAGGCAAGGCCCAAGGCCATGCGAGGCCACCGTGGTGACCTCATTCATGGACCGCTGGTCGTCCCATGCCGGTCAGCAGTGCTGCAGACACAGGACAGAACGTCCCCTGCAAAGCGAAAAGACTAATAGGTGCCAGGGGGGTGGTGCCAGGTTGGGCCGACTTCCTGAGGTGGCTGGCAGGTGGGTGAGGGGCAGGCTTGGGGGGAGCAGCTGCCCCACCCATGTGTCCCCCACTCCCAAAGGTCTTGAGTTTGCCAGCCCCCGAGAAGGGATGCCTGCCTCCCAGAACGTACCTGGTGCCCCCCAGGCCTGCTAAGGACCAGGCTGGGAACACCAGGCTTGGATGTGGTGCTGGGCTGCCGGAGTTTCTTTTTCTTATCTTATTTTTAATAATTAAATGTTTTTATAGAGATAGGGCCTCACTATGTTGCCCAGGCCAGTGTCAAACTCCCAGCCTCAAGCGATCCTCCCATCTCGGCTTCCAGAAGTGCTGGGATTATAGGCGTGAGCCACCGTGCCCAGCCATCCCCTGGGTTTTTGTGCCACAGTGCTCATGGGTTTCTGACGATGACCTCTCCTGGGAAATTGGGGGTGCATGTCAGCCACCGCAGAGGCTGAAGACAGAGGAAGGAGCAGAGGCTCTGGGGCCCTCAGCGAGTCCGTGGGACAAGGTGCTGTGACCGATGGCAGTGGGTGGGTAGGGGATGGGCTGGAATGTGCCCCCCAGGATGTCCAGGCCTATTTCTACCCATGGCCGGGGTTTCCTAAGGGTGGGGAGCTCTGCCGAGAGCTCCTGCGGCACCCCTAGTACCCTCCTGTGTCCCTGGCTCGGCACTGCCACCATCTGGGACCCCAGCAGCAACTGGCAGCAGGGCTGGGAGCAGCTCTGGAAAGGCTCCGCGGAGGCTGCGGCTCTGGGTCCTCCCGACGTTTTCTTTCTTGGAGCCAAGGAAAAGGGGGGCCGGAGTGGGAGGACGCTGGAACAATGCAGCTTCTGTCCCTCTCTGGCTCCTCTGTGCCGCCCCGAGTGCGGGACCCCTTCCAGCCGGCCGGACGCCTCCTCCCCCAGGGCTGGGGAAGGGTCCTCCTCCCCGCCCAGGGCAGCCCGGCAGCCTGGCTGGGGCCGCCGCCCGGCTGCCGCTGTGGGAGGCAGGCTGCACACCTAGAGCCTGGGCGGCCCTGGGTGAGACCCCGGCTCAGCTGAGCCTGGCAGGGACAGGGCCTTGAGGCCGGGAGTCTGGACCCGGCGTTGCGGGTTGGGGGCGCCACGGAAGGACCCACGCAGCCTCCCCATTCGGCAGGTGCGGAGGGCGGGGTGGATCTGCGAGCTGCGGGAGGGGAGGGGGGTGCAGAGCCGCGCTAGAGCCTGGCCGTGCGGAGGGGGCGCCAGGGCTGGGGGCACAGGAGGGCGCTGCCCAGCGGGGTGTGGGCAGGGAGGAGGAAGTCGTCTGGAGGTGGGGCTTCAGCCCGGCGGGGACGCGGTGGGGCGTGGCCTTGCTGTTGTGGGCGTGGTCCATGGGGGCGGTGGGCGTGGCAGAGGCTGGTGGGTTTGGTGTCCCGTTGATAAACACAAGGAGACTTACGTGCGGCTGGAGGACAAAGAGCCTTGGCGCGGCTCAGTCAGCGTATTAATCTCACCGCCCTCTGCTGGCCCCTCCCCAGCCAGCAGAGAAGCCCCAGAAGTGTGTCTGGGGGTCACCACCCTGCCAGCCACTGCCCTTGTCCAGCTCCTCTGGGTGTGTGGCCTCTATGAGACCCTGACAGCAACCAGCCCCCACCTCCCTGGCCAGAGGGCACAGGCCCGGGCCTCCCACACTTGCTCCTGGGCTGCCCACCCCCCACCCCAGCAAGGGTGCCAGGCAGGACGGAGGCTCTGCTGCCACTCTTGGTGCGGGCAGCATGATTGGCATGTTGGGAGGAGGGAGCCGGCCCTGAGCCCTGCAGGACCGCCCCCTGCCCTTGGCCTGTCCCCGATGGCCCTGCCTGTCCCACAGGATGTGCGACTGCCCTCGGCCCTGCTGACCGTACTTCTCAGCCCTCCACCGTCTGGGCCCTGCTCAGGGCGTTGTGAGCACGGTACACAAGAGTTACTGGGGGAGCATGCCACCAGCCTTCCTGGGAGAAGTCCCCTGAACGTCCCAACGAGTGGCCTTGGGGTCAGGGATGTGCATGGCATAACCTCCCCTGCAGTTTAGGCTGTGGGCTCCAGCCCTGGCCAGCTGATCAAGTGACTTGACCCACTTGTGCCTCAGTGTCCCCATCTGGGGAACGGGCCCATCAGTAGTGCTGGGAACAGAGCTTGGCAGGGGTGAGAGGCCAGCGAGCCTGAGGGCCCGTAAGCCTGTTGCGTTCGGGCCCTGGGTGGACGAGGCAGGTGTGGCTGCAGCACCATCCGCCTGTTCCAGCAGCCCAGTGGCCCTTGGGCAGCCGCCGGGATGGAGGATGCACCCTCTGTCCGTGCGCCTAAGAGGGCCCAGAGGGGACAGTGTGTGGGAAATGGCACACAGGGTCCCGCACGCAGCAGATACACAGTAAATGCCTGCTGCTTGGTCACCAGGCTCCTGCCGTGTGCCAGGCACTGCTGGGGCCCTCACTGGCACCAAGACCGCTGAGCCGCGTCCAGCAGCTGATAGGTGAGGAACGGGGAGCCCAGGAGTGAGCCACATGGGATGAGCTTTGGGAGAAAGAAAAGCCCAACAGGGAGGTGCGGACAGGAACGGGGGAGGTGCGGACAGGATCGGGGGGAGGCGCGGACAGGAGCGGGGGGAGGCGCGGACAGGAGCGGGGTGGGGGCGCGGACAGAAGCGGGGTGGGGCGCAGACAGGAGCAGGGGAGGCGCGGACAGGAACAGGGGAAGCAGGCTGCAGCACCTTTGGGAGATGACCATCATGGTCCATTCCGACTGCCCTCACAAAGCACCGCAGGCCGGGGCAGCAACAGCAGACGTTTACTCCTCACGGCTCTGGAGGCCAGAAGGCCAGGGTTTGGGTGCTGTGTGCTCGGGTGCTGGCGAGAGCCTCTTCCGGGCTGGCAGACGGCGCTTTCTTGTTGTGTCCTCACCTAGCAGAGACAGCGAGGAAGAAGGGGGAGCTTGAGAACACTGGTGGCTTCTCTTAAGGCCACTTGTCATTATGGGGCTCCATTCTCATGACCTCATGTAAACCTCAGGACCTCCTAACACCATCCCATGGGGAGTTAGGGCTTTGATCATGATGCTCCAGCAAAGACTGGAAGTCAGAGAGAAGTGAGCCGCAAGCTTAGACGGAGGAACAGCAGTCTGGGCAGAGATAACAGCCTGTGCAAAGGGCCTGAGGCAGGGGCCAGCCTGGTAGGTGAAGGGACAGGGAGACTGTCTGGAGCTGACGGAGCAAGGCGAGGGCCTTGGCCGAAGAAGGGAGGGCCTCGTGGGCCCTTGTGTGAGACCCCCTCCCCAATGGGGCGGGGCCCTCAGGACCCAGCAGAGAAGGGGCAAGGCCTAGGCCAGCCCTTACCAACCCCATGGTCCTTGCATGGAGAGGGGACTTAGGGGCAAGGCTGGGGCAGCAGGCAGGTGAGGGGCAGGTGATCCGGCTCCAGGGAGGTGAGGAGGGGTGGGACTCTGGATCTGCAGTGAGGCGGGGACAGACTGGATTTCAGACCAGAGGTGGGCGTGAAGGAACCGTGGGCAGCTGAAAATCGGGGTTGCTGAGGTCTGAGCCAAGCCGGCGGGGCGGGTGCTGCCCTGAGGGGTCCGGCAGGCACAGGGGGCACCAAGATGCTCGATGGGCTTGAGTTGGCCATTGCACATAAACGTCTGGAGCTGGGTGAGGACAGAAATGATGATGACAGTGTGACGGTCAGCGTCGGGTGGCCATGGGGCGGTGCTGGGAGAAGTTTCCAAACGTTGCCCTCGCAGGCGGGAGAGACAGGAAGCCAAGCCAGTGGGCCGGGCCTGTCTGGGCAGCTCAGCCAAGGGCGCTGGACTCACACTCAACGCCTCAGCCGACTCTGCAGACAGAGGGTGCATTGAGCCAGGCGCAGCGGGCCTTCCGCCCACCGTCCGTGCCTGGCCATGAGGGCGCCCGCCCTGGGGCCAGACGCAGGCTGTGTCTCAGAAGAGCATTTCAGCCGCTGCTGCAGCCAGGGCCCATCCATGCGGTGTCCTGGTGGAGGGCCAGGCCTGGCAGAAGCAGCTGTGCCGGGCCCAGGACCCGGAGGATGCGGTGGGGAAACCAACTTAGGCCCCCATGGCACTGGGGGCGGCAGAGGGAGAGCCAGGCCCTCAGGCAGTGCACACCGGGAGACGGAGCGGGGCTCTCGCTGGGTGTGGTAAGTGAAGGGCCCGCCCCAGCACAGACGTGCTCCTCTGTCATTTCCATGGTGTGGGGAGCAGGCCCCGAACTGTGTGGGGTCAGCAGCTGTCCTCAGAGCTACCTTGCTCATCTGGGTGGGGGTGGGCAGCTGGTGGCCCTTCAGAGAACAGGCCGTCGACCCCAGCCCCGTTCTGTCCCTTCAAGCTGCACCACCCGAGGCTGGGGCGGCTCCACCTCAGTGCCTGGCCGGATCCTGAATGTGCCGGAGCTAACCCTGATCCCGCTGACCACTGTGGCCACAGGGTGGCGATGGGAGCCCTGCCCCGGGCGTTTGTGTTGGGAGTGGGAGGAGCAGTGGACGGCCCCAGGTCCCAGTGTCCTGCTCAGGCCCCTGATGGGCCCCACGTGTGCCTCTGGCCGCACAGGTTTCCATCCCAGGCCCCTGGAGAGCAGGAGCTTAGGGTGTGTCCTCGGAGCCCAGAGGCCAGGCCAGGGAAGCGCACAGCCCACACTCAGCCAGTTCCCGGTCCCTGCCCAGCTCTCATGAAGCTGTAGGCATTCGCCGTGGGCTGGTCTGGGGCCAGCGGGCTGGAGGCGGAAGACCAGCCTGGGCCCCCAAGTCCTCAGCTCCCTCTGCTCCTGTCCCCTTCCCCCCAGCTGCGTTTAGGAGCTCACCATTTAAACGGGTCACATGGACAGACTCAGGAAGGGGCTGCTAGCAGCCAGGCCGATCCAGGGGCTCCCCTCTGCCCCATAGGTAGCACCTTGCTGTCCACCAGGTGCCTTCTTAGCCGTCTGAAGCCCCCAGTGCATCCTCATCACTGCCATTCACTAGGTGGCAGCAGGACCCCCTTCCCAGTTGGGGGTGGAGGCTTGGACTCCATTTGGTGGCACAATGCTCAGACAGCAGCCCCCCAGCAAGACCCAGGCCTGTTCTCATCCGCAGCATGGGCCTGTAAGGGAGACCCTGAGAGACCCTGACACTCGGGCCCATTTCCTCCCTCCCTCATGGTCGGGGCCAGGCTCATATTTAAATCAGGGCCCTGCTGAGGCTGGGGTCAGGGGGATGTTGGCTGAGTGACAGCTGTGCAGGTGAGGCTGGGAGGGGCTGTGTGTGGGGCCCAGTGCCTGAAATGACCGAGTGACTGCCCGCCTGAGCCGGCTCTCTCCCTCTGTGGATGTTGTGTTCCCCGGCAGGGCCCAGAACCCAGGGCTAACGGTGGGGTCCGGGTGCACCTGAGGCCCCGGCACCCTGCCTGGCCATTCATGCTGCTAACTTTGACGAGTGCCCCAACCCTGGTGGCTGTGCTCCCTGATGCAGTGGGGCCTGGACAGGGTAAGGGGGTGTCTGGGCCTGCCCCCCGACATCTGCCTGATGCAGGCAGCCACCAAGCAGCTTCACTTTAGGAGCTGAGCCTCTCGGGGGGATGAGTGCGGAGGGGAACTGCCCGGCCCGGCCCATCCATGCCGGCGCAGTCTGATGAGGAGGGCGCTGAGCTCCGAGGCGTAGTAATGGGGCCAAGTCTGATGGTCTGGAGGTGCCAGGACTGGATTCTCAGAGTGCCCACTGATGCCAGGGCTGGTTCTGGCCCCGCCCTCGGACTCACACTGGGTGTGCGCAGGGCTCCTGGGCACAGCCCGTGTCCAGTGTGTCCACGGGTGGAGGGACGCTTGGTTCCCAGGAAGACTGGGTAAGGGTGGGCATAGGGGGGTGGGAGCTGTGGGTGAGCAGGGAGGAGGATGAGGGTCCTCCCAGCTGCGAGAGTCTCCCTGGAGATGTGCCAGGCGTAGGGACAGCAGAGACAGGGTCCTCAGTGTCAGCCTCGTTCCGCCGTCGTCCCCTCTGCCTAGAACGTTCTGCTGCCCTTTCCACAGTGGCTGTGCCCCTGTCCGTCCCGCCGCCTCCTCAGGGAAGCGCCCGCAGACCCTGGCTCTCAGCCACAGCATCGGGCCCTTCCCACAGGGCTTCCTGCCTGGTTGAGGACATTCCCCACTTCCCGGATTCCATCCCATTTTTTCCGTTCGCCAACTGATTTCTGATCTGCCAGGTCTGTCGTGCCCTGGATACAGGCTCCTGAGAGTGCTCAGGGAGCGGCTGGGCTGAGGTAGGGCCCACTCTCCCAAACTCCCAAATCCTTTCGGGCCCCGCAGGGCTGAGCGACACCCGTCTCTGCCAGGGCTGTGTTGGGACAGGGCTGAGTGACACCCGTCTCTGCCAGGGCCGTGTTGGGACTGAGGCTTGAAGGTGGGCCTGGCTGTGGGGCTTCCCAGGGGCCCGGGACAGGCACTGGTGGCTCCGCTGAGTCTGCAGCTGGCCAGTGTTGGGTCAGGCAGCTGTGCCCCACCACCCCACTGCGGCTAGAGGGGATGGGGGTCCCTTGGGTGGAGACACGGCCAGTAGGGTGAGCCCCGGGCCAGGAGGGATGGACAGGAGCCCGGGGAAGGTCCCACGGCAGAGCTGGTCTGGGGGATTCATCTGAGGCCTTTGCGTCCCCGACCCTGGCCTGGGCTGCCCGCAGTGAGCTGGGAGTGGACCCACAGGCCCGCCCCACCTGCCTCCGGGGCACAGCATGATGCACCCTCAGGAGGGGGGATTGGGTGGCCTCACAGAGGTGACCAGGGGCCACAGGAAGGGTGATCCAGGCAGAGGGAACAGCAGGACTGACGGGGGAGGCCCTGTGTGCGGCAGGGGAGAGGCCTGTCCAGAGCCGGGCCCTTCCAGCACAGGGAGCCAAAGCCAGACCCCACCTGGCCCCAGCCAGGACGCGCTCTGTCTCGACACCTGTCCCCTTTGACTCTGACAGTACAGTCGGGGAGACGCAGAGGACACTCAGACATGGCGCTCGCCTCCACAAGGGGGGCTGGCTGTCAGAAAGCCATGGCCGGGCTGGTCCTTGGCCCCCCAGAGACTCTGGCCTGGCCCACCCAATGCGAGGTGCCAGGGTGGTGCTGGGCTGACCGGGTCCCTCTGTCTTCAG
Seq C2 exon
GGGCCAGACCCAAGAGGACGCAGAGGCTGAGCGCGGAGACCTGGGACCTGCTGAGACTCCCCCTGGAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160360:ENST00000440944:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.409 A=NA C2=0.583
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(44.4=66.7)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains