DreINT0074563 @ danRer10
Intron Retention
Gene
ENSDARG00000017311 | gpsm2
Description
G-protein signaling modulator 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1169]
Coordinates
chr2:45640910-45643383:-
Coord C1 exon
chr2:45643254-45643383
Coord A exon
chr2:45640993-45643253
Coord C2 exon
chr2:45640910-45640992
Length
2261 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGG
5' ss Score
5.88
3' ss Seq
TTTGTTGTGGTTTTTTTCAGGAG
3' ss Score
10.09
Exon sequences
Seq C1 exon
ACCGGAGATCGTAGCGGTGAGTTGACTGCTCGCATGAACGTCTCAGATCTTCAGATGGTGCTCGGCATCAGTTACAGCACAAACAATTCAGTTCTGTCAGAGAATAAAGAGATCGACTACAACCTGCATG
Seq A exon
GTAGGGCACTATCTCCAGAAGTTGTCTTAGAATTTTTTGTACAGATTCTCTGGACCCACGTTATTTTAGGCAGCCTAAATTACTCAGGGATGTGATACTTCCGTAAAAATGCAGATTTCTGTATTCTTCGAGCTCAATTGGGTGACCCCTGTGGTTTGCACAAATCCAAAGTTTTTTTTGAGAGGTTCATCATCATCAAAGCAGACAACCTGATGGTTTCCCCCTTCAGTGTTTATTATTATCTATAAAAAGGAGCAGTAACTGCTTCATTCTGCACATCTTGTAGACTCACCTAGGCTTTTGTGTATATAACATATTGATATTGTGTAGTCCTATAATGTGCGCATATGAGGAAGCCGCTGATCATGAAATTTTAAATGCGTGCGGCTGTGCACTTTTTCCGCTCTCACAATTGCATGTCCCGACCATGCGCGCTCTATGAACATTTTAAATAAAGCCAGGATGCACATTTGTTATTATCCTCTGCAAATCATCTGTTCTTTAGTCATATATTTAGTTCTACAGCCAGGAACCTCGAATTTAATACCTGAAAGTGTAGATGATAAGCTAGTACAAATTTCCAAAATTATATTTATAATTAATTAAAACTATAAAAAAAAAACAGGACTATGCTGAAGAGAGGCAAGTGAATGTGATAAACACTTTTTTTTAGCGATGAATGTTATTTTTTTGTACAGTTCAAATTGTTGACTGACTAGTAGTTTATTTATCACGTTGAAATAAAGTCTTCTAAATTACAGGAAAAATATATTCTTTTGATGCAAGAGCACTAAACCGAGTTAGTGGCTCCATCTAGCGGTACTTATTTTTTGATGTAAGTACTTAGTGCTTACAGCCACCTAATGTGAAGTAGGAGCGATTCTCTTAGTTATAAATATGGCAATACAAAATGTATATATCTTGCTTTTTTTTGGCTGAATTGTAGTTCAAGTAAGTATCTTTATTTTCTATGCATCTCTATCTGTCCACTTGCCAGTGAGACAATGTTCATATTTAAAGCTATGAGAACATATCCTTGCAGGCTATGCTATGTGATATGTGCAGAATGGTTTAAAATCATTATGACATTGTAACATTTTAATAAGACAATCTTAAAACAAAAGTAATGCCTTTAAAAGCAGAAGTTAAATTCACTAAACGATTTTGATGACTACAATGTTTTTTTCTTTTTTTCACTTTAAAAATATTATAAATATTAGGCGTCACTGTGGTGTAGTGGGTAGCACAATCGCCTCACAGCAAGAAGGTCGCTGCTTTGAGCCCCGGCTGGGTCAGTTGGCATTTCTGTGTGGAGTTTGCATGTTCTTCATGCATCTGCCGCGTAAAACATAAAATATGCTGGATAAGTTGGTGGTTCATTCTGTTGTGACGACCCCTGATGAATAAAGGGAATAAGCCGAAAAGAATATGAATAAAATATTATATTGTACAAATATTTACTTGTAGATGTAAATGTATATATAATATAGTAATTAATATAATAATAATAATAATAATAAATTTTATTTGTATAGCACTTTTCCAACATACATGCAACTCAAAGTGCCTCACAAACAACAACAAAAAAGCATTAAAATAGACCACATAAACTTGTCACATATACTCAGATTAAAGCATTCATGTACATAAAATATAAGCATATATCCACATGATCACGCACACAATAGTCCTTATATATGCAAGCACACACCATACATACACACATAAACCTACAACAATATAGATAAAATGCATACAACTTAAAAGCTTGTGTATTCATATACAATTTTAAAAAGATGTGTCTTAACACGCTTTTTAAAAACATGAATACTAGGGGATTCTTTCACTACAAGAGGGAGACAGTTCCAAACTTTTGGAGCATAATGGCTAAAAAAAAGTGCCGCCAGATCGCATCAGGTTTACAGAGTAAAATTCTAAAAGTCCAGCGTATGACTGTATATGACATTTATTGTCCAACATCAAATTTTGTTGCAAAATTGAATATTTTAGTCAACAGTGCTTCACTCCATTTGTTTGTGGTATATGCTCTCTGGTGTTAAAGTTTATTTTAAATATTTGTGCAAATGGCTCAATCACTTCTTACTTTCTAACATTTATGTATTCACTTACGAAATTTGTATAGTAAAGAACACAGTAAATCTTTCTGTCAGCGGTGCATGATGTAATAGTCAGCTAATCTTCCTTGGTAAACCTCACTTGTCTTCAACAGTTTTAAAGCAGTTTGTTGTGGTTTTTTTCAG
Seq C2 exon
GAGCCAGACCCAGGATGAGCCGACGACACAGTATGGAGAACCTTGAGCTGCTGAAACTCACTCCTGACAAGATCAACGCCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017311:ENSDART00000024034:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.282 A=NA C2=0.721
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(38.2=47.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]