RnoINT0067129 @ rn6
Intron Retention
Gene
ENSRNOG00000012149 | Gpsm2
Description
G-protein signaling modulator 2 [Source:RGD Symbol;Acc:1560967]
Coordinates
chr2:211495807-211504032:-
Coord C1 exon
chr2:211503903-211504032
Coord A exon
chr2:211495878-211503902
Coord C2 exon
chr2:211495807-211495877
Length
8025 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
3' ss Seq
TTGTTTTGTTTTTAACAAAGGTG
3' ss Score
5.03
Exon sequences
Seq C1 exon
GTTGGGGACAAAAGCGGCGAGCTGACTGCACGGCTGAACCTCTCAGACCTGCAGATGGTTCTTGGTCTGAGCTATAGCACAAATAATTCCATGATGTCTGAGAACATCGAAATCGATGGCAGCTTACATG
Seq A exon
GTAGGTAGCAGCGTGAAAACCCCACTTCTTTATGCTTAACATTTACTTCATGTTCAGAAAAAACTTTTACGTTGCTAGGAAGCATGTCCATTGTGTGTGGGTGACAGTGTGACTTCTCCCACACTTGGTTTTACAGTTCAGTTCACCTGTCAACATATAGAACATAGCATTTTATAATTCCCACTGAGAACACAGGAATACTGAAGGTATGATTATTTACTCTGGTTAAAAATATATTCAAATGATGTTAAGTTAACTTGTAGGGTAATTCAGAAATGTATAAATATGAATGTGCTAGAACTAAAACCTTTTGTCTACCGTTTTTATTTCAAATAGTTGTAATATATCTGGTTTTTAGTAAACGCCCCCCATTTCACTTCTGGTGAAACAACTTGGAGTCGTCTCTTTCTTAAATCAGAAAACCATCCACCTGTATCTGTCAGCTGCTCAGACTTTGACTCTGAAATGCATTTTTAAACTTGGCTCCATGAACCACAGGCATAGTTCAGTGGTAAAGCACTTGCTGGGGAGCCCCGTGACCCAGGTCCAAGCCCTGGACCTCACGTGGCAGATGAAGAGAACCAGCTCCTAGATGCACACCACACCAATAAATAAATAAATACAGTTTTTAAAAAATGTCTAGGTTCCTAAGCTTAAATTCACGGTTGAGGGCTGGGAAGATGGCTCGGGGTTAGGAGCAGTGGCTGCTTTTCCAGAGGTCTGGAGTTTAAGTGCCAGCATTGACATGGCCATTCAGAATGGTAACTCGGGTCCCAAGGGGTCTGATGCCCTCCCGCTTTGGCACCAGGTACAAATGTGGTTCACAGACATGAGCACGCAGAACACCCATACACAAAATTTAAAAAATAGAATGAAATTCTTGGTCCAAAGAATATCAACAAGAATGTTTCAGACTGAAAGCAGTGGAAATGATAGCTTTATCATGGGCTGTTTCTTCTTTAACTCGGAGAGGTAGTGAGAGATCCACACTGACAATCTTAAGATATCCAAAGAACACTCCAGAAAAGATTCCAAAGCGAGGGAGGGGTGTGTGATAAACTCAGCTGTGCTTTGTAATTGGATAAACTCAAGTTTTCTGCGTTTTACTTGTGACGAATCGGTATGTTGTAAGAATTCTCATCTTAAAACATGTTTCCTCATGAACCCCTCTAGCTTCAGACCCATGCTAGTGTCTCCTTCTTCTCAGTCACTGAGGCTCCATGGTAGTGCCCTGGTCTAGGTCTGCAGTGTTTCTGGTAGCTGACCATGCCCACCTGACCTCCTCCTCCACAGGGCTACACTGCCGCTCTGCACTCACAGCTCTGCTCTCCATGCTCCTTCCAGGACATCTGCAATACCCAGGCTGCTCTCCTCCTCTTTTTCCTCCCTCGCTGTTCACCGTCTCTCATTGGAAGAGATCTTACACTTCGGTGCCTTCAGTAGAACATTTTAGAATGGTAGGCAAGTTCTCCAGCAATGAGATGCAGGGCAGTTAAGAACACTGGCTGCCCTTCCAGAAAACCCAGGTTCCATTCCCAGCACCGACGTGACATCCAACACCGTCTTACCTGCACTCCCAGGTACAGACTCACACGTGACACGCATGAAAATAAAACTTCTAAGAAGTGGAAAAAAATGGTCTTCATGAAATACAAACACCAACCACTTCACAGCTTGTAATCAAAATTTAACCATAAAGGTAACCCAGGAAAGCAAATAGAAATTTCAAAGGATCTGAATCTCATAGGTAGCTTGTCCTCAGCACAGTGCAATTAAGTTAGAAATTAGTGTCAAGAAAGTAACATAGAACTCTGGACCAGGTGACACAGGCCTGTAACTCCCGATACTCAGGAAGCAGTTCAAGGCCAGGCTGGGAACTCATTCACACCTGTCCTAAAACGGGAAAAGAGGACTGTGGTGCAGCTCAGCGGCAGAGTCCTTGCCCAGTTCGTGCACAAGCATATGCATATGCACACGTACATGCGTGCACACAGTAATATAAACATCCATTTGAAAGCTTAAAACACACTTCTAAGTAACTTACAGGGTAAGGAAGAAAGCTTAAATAAGATTAACTATAGTTTAGGAATCACCATGAAAATAAAGTATTTCAGTTAAAGTTTTTAATCGTATGTTTGGATGTTTTGCCTGTGTGGGTGTGTTTGCACCACCTATGTACTGGTGCCTGAGGAGGCCAGAAGACGGTGTTGGAGCCCCTTGAGTACAGGTGGTTGTGAGGCACCATCTGGGTACAGGTCTCACTGAACCGTCTCTCTACACTTCTGTACTTCAGGGGTTTTGTGGCATGTGACTTCTATTGATTGGTTCTTTAGCAAAATTTACATTGTGAAGAATTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGATGAGATGTAGTGAAGATCTTTACAGTTAACATTTGGTTCTTTAAAGATGAGCAAATCTACAGGGTTAGAAAGAGAAAGTGAGACTTCCTGTGTTTACCGGAAGTCCCACACCCGCGGATCCCGGCCCGCAGCAGCTCTCTGCTCCCAAACCCCGTGGGAGAGAGACCTCACCGCCTGATCAGGTGGGCACTCCTGAGGCTGCAGAGCGGAGGAGACCACCAACACTGCCCACCCCTGCCCACATCCCTGGCCCAAGAGGCAACTGTATAAGGCCTCTGGGTTCCCGTAGGGGAGGGCCCAGGAGCGGCAGGATCCCTGCGCCTGAGACACCGCCAGAACCTGAAGGAAACAGACCGGATAAACAGTTCTCTGCACCCAAATCCCGTGGGAGGGAGAGCTAAACCTTCAGAGAGGTGGACACGCCTGGGAAACCAGAAGAGACTGCACTCTGTGCACATCCAGACGCCAGAGGAAAACACCAAACGCCATCTGGAACCCTGGTGCATGGAGGCTCCCGGAAAGAGCGGCGCAGATCTTCCCGGTTGCTGCCTCCGCGGAGAGGACTTAGGCAGTACCCCACGAGCAAACTTGAGCCTTGGAACCACAGGTAGGACCAACTTTTCCCCTGCAAGAAACCTGCCTGGTGAACTCAAGACACAGGCCCACAGGAACAGCTGAAGACCTGTAGAGAGGAAAAACTACACGCCCGAAAGCAGAACACTCTGTCCCCATAACTGGCTGAAAGAAAACAGGAAAACAGGTCTACAGCACTCCTGACACACAGGCTTATAGGACAGTCTAGCCACGGTCAGAAATAGCAGAACAAAGTAACACTAGAGATAATCTGATGGCGAGAGGCAAGCGCAGGAACCCAAGCAACAGAAACCAAGACTACATGGCATCATCGGAGCCCAGTTCTCCCACCAAAGCAAACACTGAATATCCAAACACACCAGAAAAGCAAGATCTAGTTTCAAAATCATATTTGATCATGATGCTGGAGGACTTCAAGAAAGACATAAAGAACTCCCTTAGAGAACAAGTAGAAGCCTACAGAGAGGAATCGCAAAAATCCCTGAAAGAATTCCAGGAAAACACAATCAAACAGTTGAAGGAATTAAAAATGGAAATAGAAGCAATCAAGAAAGAACACATGGAAATAACCCTGGACATAGAAAATCAAAAGAAAAGACAAGGAGCTGTAGATACAAGCTTCACCAACAGAATACAAGAGATGGAAGAGAGAATCTCGGGAGCAGAAGATTCCATAGAAATCATTGACTCAACTGTCAAAGATAATGTAAAGCAGAAAAAGCTACTGGTCCAAAACATACAGGAAATCCAGGACTCAATGAGAAGATCAAACCTAAGGATAATAGGTATAGAAGAGAGTGAAGACTCCCAGCTCAAAGGACCAGTAAATATCTTCAACAAAATCATAGAAGAAAACTTCCCTAACCTAAAAAAAGAGATACCCATAGGCATACAAGAAGCCTACAGAACTCCAAATAGATTGGACCAGAAAAGAAACACCTCCCGTCACATAATTGTCAAAACACCAAACGCACAAAATAAAGAAAGAATATTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAGACCTATCAGAATCACACCAGACTTTTCGCCAGAAACTATGAAGGCCAGAAGATCCTGGACAGATGTCATACAGACCCTAAGAGAACACAAATGCCAGCCCAGGTTACTGTATCCTGCAAAACTCTCAATTAACATAGATGGAGAAACCAAGATATTCCATGACAAAACCAAATTTACACAATATCTTTCTACAAATCCAGCACTACAAAGGATAATAAAGGGTAAAGCCCAACATAAGGAGGCAAGCTATACCCTAGAAGAAGCAAGAAACTAATCGTCTTGGCAACAAAACAAGGAGAATGAAAGCACACAAACATAACCTCACATCCAAATATGAATATAACAGGAAGCAATAATCACTATTCCTTAATATCTCTCAATATCAATGGCCTCAACTCCCCAATAAAAAGACATAGATTAACAAACTGGATACGCAATGAGGACCCTGCATTCTGCTGCCTACAGGAAACACACCTCAGAGACAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAACTTTCCAAGCAAATGGTCAGAAGAAGCAAGCTGGAGTAGCCATTCTAATATCAAATAAAATCAATTTTCAATTAAAAGTCATCAAAAAAGATAAGGAAGGACACTTCATATTCATCAAAGGAAAAATCCACCAAGATGAACTCTCAATCCTCATCTTCGGTTGGTTTATATACAAGTGTGCAATTTCTAGGCTTGAAAGTAAAATGATGCTATCTGGTGCTGGATAGAGGAGCCTTATTTTTTATTATGGCAGCTTGCTATTTTTGTAATATGGTGATTTGGTTGAACACATTAAAGTACAGTAGTAACTGATCTCCCCCTCTTCCTGGATGAGTGAGGAGATGATTAAATGTTGATGTCAGCATCCATGAGCATATTCAGATGAGCTTCTGCTTCTGTTGAAAAGGGTGCTGTGTTTGATTGTGGTCCGAAGCTTTGAAGCACTACTTGGCATCTCCTTCCTTGGAGGTCTCACTGTTTAAACATAACAGATTTGATAGCTTGTTGGTAAGGTGAGGTCCAGCTTGTCTCCACTAGGTCATCTTCATGTGAATCCGGTGGTTATACGGTTTTGTTCTAGGGATATTTCATTTTTTTTAATAACGGTTTTAGCTGACATTCATGGAGAGAATGAATCCTTAGAAGTGTGCCACTAGTGAAAGGAAATCCTGTCTAGAGTATGTTTCTTTACAAAGCTGTGTCACACCATCCTTTGGGCCCTCTGCTGGAAAAGTAGAATCAAGTCTCAAATAATGCCTTTTAAATTGTATCCTCTAGTATTATAGATGTAGGACAGTACTGTATCATACCTCTGTGGATGTAAAATAGCTTGTACCTGCTTTATGATACGTAGTAGTGACCGTGCTTTATCAGAGCTGTTTTTAATGATGTTGCTCAGAATGTTTTCTTTCCAGATGATGATTGAGAAGCTAATTTAAAAAAAAAAATGGTGCCAGGTACCACAAGAGTAACAGAACTGTGCTGTTTTCTCGGGTTTTGTTTTTTTTACTTTTTTTTTTTTAATGGAGTGTGCTGGATGTCTCTACAGTTTTGTTCAGATGACTGCAGAACCTGGAAAAGCTGTTGCTGCTGTTGATGCATAACACACTGCTATTATTGGTCTTGTTATATAAATATAAATATATATATACAGATATATAATTTGAATTTTTTGAAACTTTACCTGTGCTGTCAACTTTCGAAAAAAGTATCCCCGTTTACTGTGTTGAGTTGGCACTGTACAGAAACTAACAGCCATATTGGTCTAGAAATGTTGAACTTAAGTTTTTTCCATTTGTACAGGGGTAACACACTGTATTAAATATGTAAGGTCTTATCTACGTGGGTTTGATTACAAAAACTAATAAAGTATTCTCTAAATAAAAAAAAATGAAAAAGAAAAAATAAATAAAATAAAAGCTTAAAAAAAAAAAGAAAGAGAAAGTGAAAGAGAGAGAAGGGGCATAACAGTGGCTGTGCAGACTGAACAGGTGAGAGCTCAGAATAATTTTAGGACAATCTATTTCAAAACCTGGGGGAAATTCCAATTTCTAGAATCATAACCAACCATAAAGAAATTAGGTCAGTAATTAAAAGTCTTCCCTTGCTGGGTGGTGGTGCTACACGCCTTTAATAAGCCCAGCACTCCGGAGGCAGAGCCAGGCAGATCTCTAAGTTCAAGGCTAGCCTGATCCACAGTTCTAGGACAGCCAGGGCTACACAGAGAAACCGTGTCTTAAATATCTACCCATCCACCCCCAAAATCTTCCCCCTAGAAAACATGAATGCCTACAGCTGTCCTTACCATCTGAGGTTATGCTGTCTCCGCCACGAGCCTGTTCTGAGTTGGTCAAAATGCAGTCAACGTGCCTAGCATAGCAAACACAGAGCCAAACAGTGCACCAGCTGTGGCCTGTAGGTAGAGCTTTCTGCTGATCCGAAGCTGCCCCCCACACACAGCTGCCCGACCATGAGCGTATCCTCCATTCACCTGCGGTAAGATCCAGATTCAGTAAACAGTTCCTGCTGAATGAATCGTTTTTATATCAAGAGCACAAGACAGATAACTGAGACCAGCTTCACTCATGAATGTAGGTTCAAAACCAAACAGATCAGGAACGTTATTTTAAAGCAGTTGGGTTTAATGGAGAGCGCCGGATGCCACTGCAGCTTTGTTTGAGGACCGCAGCACCATCGCTCCTGATGATGCACAGTGCCGTCAGACACACAAGCTTTCATCTCAGGGACTGTAAGACAGAAATAAAAGGACGAGAAAGATTCATCACACAAAACCTAGCCCAAAGGAGAGCTGTGTTAATACTGGATCAGATGTACCCAAGACACAAGGCCTGTGCTGGGCCATGCCTCCATTGATGAGGACGCTTACCTAGCGTGGGCCGGGTCTAGGATCTCCAGTGCTGGGAAAGACATGATACCCCAACAACGATGGAATTTATATGTGTGGGGCTTGCACAAGGGGGTTCATATCCTGGCCACGTTTTAAAGCTGGCCGGTGGGCATCAGGCATCCTTTATATTATGCCTTTGGTCGGAGGTGGGGCTTTGCTGTTTGTTTTTAACAAAGTCTTGCTGTGTAGCCCAACCTGTTCTTGAACTCACTGTACACTCGACTGGCTTGGAATTTTGGTCCTCCAGACTTAGCCATCTGAGCGGTCGTCTCGGTCGTTTGAAGCTCAGGGGCTGGAGAAGCGTCTCAGTGATCACGAGCACTGACCGCTGTACTAGAGGACTGAGTTCAGTTTCCAGTACCAAAAGGTGGCTCACAGCCATCTGTAACTCTAGTTCCAGGGGAACCAGATACCCTTTTCTGGCCTCCTTGGGCACCAGACATGCATGTGGTACAGACATTCATACAGATATGACACCCATACATGTAAATGTCTAGAAAAAAATGCTGCTTACTTTTTAAAGGATTGCGGTCACAGAAACTCTGTAATTAATATTTAACAATCTTACTGAAAAGCCATCTTTGAGAAACTTTGCTTTTATTCGACTTGTGTCCTGACTAACAGAGAGCCTGTCTGGAAATGGGAAACTTAGAAGAAGCTGTGTAGAGAGAGCAAGGGAGTTATTTTCAGTCCCCTCAAGATTGAAGCCCAGTAGCTTTCCCATGGGCTTACTCACTTCGACCACATATGTTTGGGTTTCTCTGAGGCTACATGGATAATATAAAGCAGTGATTATAAAATGCCTTTTCTAAATCAAGGGGAATCTGAGTAACCAGTGGTTACTTTGCAACCAAAAGGCGTCTTTTAACATCAAAGCATTTTAGAAGGAATGTTTTCATGAACTGTGGAAAATAATGACTCGAAAAGTGAGTGCTCTTTCCATGTGCATTTGGGAATCAAATGTTAGAAGAGGATCCTGTGGCAATGCCAGCTGTGCGTCCTGAAGGGTTCCCTGGTTTGTCTGAATTAATTTGTGTTTTGTTTTGTTTTGTTTTTAACAAAG
Seq C2 exon
GTGCAGGCACCAAACTGGGACGAAGACATAGTATGGAGAACATGGAACTTATGAAGTTAACACCAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012149:ENSRNOT00000066178:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=NA C2=0.833
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(41.4=54.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]