GgaINT0039873 @ galGal4
Intron Retention
Gene
ENSGALG00000002090 | GPSM2
Description
G-protein signaling modulator 2 [Source:HGNC Symbol;Acc:HGNC:29501]
Coordinates
chr8:1321468-1322243:+
Coord C1 exon
chr8:1321468-1321597
Coord A exon
chr8:1321598-1322172
Coord C2 exon
chr8:1322173-1322243
Length
575 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGT
5' ss Score
9.89
3' ss Seq
AACTTCTTTCTTTCTTGAAGGTA
3' ss Score
8.8
Exon sequences
Seq C1 exon
GTAGGAGATAGAAGTGGGGAACTCACTGCTAGACTTAATCTCTCAGATCTTCAAATGGTTCTTGGATTAAGCTATAGCACAAACACTTCCATGATGTCAGAAAGCCATGCGGTAGATAACAGTCTGAATG
Seq A exon
GTACGTGCTTTTCTCCAAACACTTTTTAACATCAAACTTCAAAAAAAATCTGTTATTTGTATTGTTTTCTGACTATAGATGCTGGATTTCCCTCCCCCTCCCCCCAACTCACACACAAAAAAATAAACGTTGCAGTGCTGGATCCCTTCAGCTCCTGCTTTCTTGGGGGATTTCTGTTGTGAATTGCAGGTTACTGCCTCACTTCTTCACATAACACATCATCTGAAGCTTCTAATCAGTCTTTTCTTTTTTTAATGTGGCAAACGTAGTTGTTTGCTGCCCAAATTATGTCCTTCCTTCTTCCTTTGTGCTATTGTAAGATCAGCAGGGGTTATAGTTAAAGCTGTTTCATTTTATGTTTTTCTGTGTGAAGATCCGTGCTCCTCTCCTGTGTCCCGTGAAAGCAAGTTGCATACCTTACATCTGTGTGGTTTTTACTACTGATTATTTATTCTCTTGTGAGTTGGGAACTCAGAATTGCTTATCTTGGGCATTTGATGAACACAGACACAGCTTTGAAGGTGACACGATAAACCTTAATGGCAAGAAAACATGAACTTCTTTCTTTCTTGAAG
Seq C2 exon
GTACCCGGCCCAGGGTAGGACGTCGTCACAGTATGGAGAACATGGAACTTATGAAATTAACACCAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002090:ENSGALT00000003258:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.847
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(37.5=54.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGGAGATAGAAGTGGGGAACTCA
R:
TTCTGGTGTTAATTTCATAAGTTCCA
Band lengths:
198-773
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]