GgaINT0124001 @ galGal4
Intron Retention
Gene
ENSGALG00000001797 | GPSM1
Description
G-protein signaling modulator 1 [Source:HGNC Symbol;Acc:HGNC:17858]
Coordinates
chr17:7940710-7950956:-
Coord C1 exon
chr17:7950830-7950956
Coord A exon
chr17:7940781-7950829
Coord C2 exon
chr17:7940710-7940780
Length
10049 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GAGAGTGCGTTGTTTTGCAGGAG
3' ss Score
5.41
Exon sequences
Seq C1 exon
ATCGGGGACCGGACCGGAGAGCTGACGGCACAGGTGAACATGGCCCAGCTCAGGGCAGCCCTCGGCTTGGGCCCCGGTGATGAGGAGGTGGGCATGGCTCGTCCTTACTCTGGCTATGAGGCACAAG
Seq A exon
GTGAGCGCCTGGGCCACGTGAGGTGTGGGATGGTGCATGGGGAGCCGGGGATGTGTGCATGTGTGTGACATAAGGGGGAATATGAATAGCAGAAAAGAGACTGCGGTACGGAAGAGGAGAGTGAAGGGCATGTTGTTTCTCAGCAGAATCATTCATTATGACATATGGTGGTTGTGAAATCCTTGCTGTGACCAAGGCCCATGGGCAGCATCTTATTCCCCAGTCCTGCTCTGTGCTTGCCATAAGGACAGGGAAGGATCCACCTCAAAGAGTGCACAGAGTGAGCTAACGGAATTAATCTGCATTGGGAATGAACTTCCACACGCCAAGCAGCAAACCAGCTTTTGTCTCTTGTAGAGCTCTGCAGCGCCCTTTTAGCTGATGTGACTGATAGAACAAGCTTTCAGAAGGTGACTGGCAGGGATTTTTGGCTGCTGTCATCCTGATTAGCACCCAAGGAATCAGACTACAGCAGTAGCTGAAGGCAGGCTGTGAGCATTGGTATGCTGGGCGCTGCTCCCACCTGCGGGGATGCTGAAGCTGGAAGCTCCAAGGCTTGGTGATGGCACACAAAATGATTCTATTCACTGCTCTGGGCCGTCCTGCCCCTGCTGCCCGGTGTGGATGAGTCCTCACTGCCAGCCTGACACGTCCACAGCTTGGGGACCATCTGTCTGTCCTGCAGCTGCCGCCATAGGTGTCCGGGGGTGCCTGGCATGGAAGCTGGTTGTTCTGTAACTGTGGACAGGTTTATTAATTCAGACAGATGAAGTCGCATCCTGGGAGGCGCAGGCTGATTAAATATGACCTTGTTAGTGCAGATGCTTTCTGAGACTGTGTGTTCTTTTTCCTGGTGGGAGAGCTGGCTGAGGGAAGGTGATGGGATGCTGCCTGCAAGTGTTTGCTCTGTGTATTGATCTTGAAGGTGTAGCTGCTATGTCAGTGCTAAAGCTTTTCCTTGGAAATAGAGCTGGGAGGGAGGGAGCCAGTGTGCTCTGCCATCCTCCAGCAGAGCAAGGCTGGAGTCAGAGGTGGGGACAGCTGCATGCTCCAGCCCAGGTGAGCTTCAGGTTGGCTCCTGAGCAGTCTCTGCCTTTTGATGTCGTGGTGAGGAGAGCCTGCTTTTTCTTCTTCCCTTCACATTATTTTCACAGCTTAAGGATATAACATGACTGCATACTCATAAGGATGCTAAGTTGGCTGGGTAGGGCGGGCATGCTGTAAAGTGCACAAGTTCCATCAAACAGGTAGGGTGAAGTTTAAGAGCAAATCTCAGTTCTGGAGAAATCCGTGCAGCTGAGAAGCCCTGAGACAAACCATTGGGCTGCCACGTCCATCATGGGCTGCTTGCTTCCAAGCCTTGGGTCTGCCCTTCACTGGGGGTGTGTGTGGGGTGGGGGGGGGGGGGGGGAAGGAGTGTTTGGTGTTTTCCTCTGCTGTTCTGGCTCCTTTTGCTGAGCTCTTTGTGACTTAATTAATGTTCTGAGAGCAATCGGAGGTCAGAAGACAAAGCTGGAGGCTTTGGCTTGGAGGGAAGTGGGACAGTGCTACAAAAGTCTTGTGAAAGCATCGACCTTGTGGAGAAACACAAACAGGCAGAGCTTAAAGCAACAAGCAGAGAGAAGCCGTGGAGCAGCTAAAACATGAGGCAAACAAACGGGCTGTGTCTGCGTCTCCAAATGCCAAATACGTGGCCCTGAGAAGTGCTCTTGCCCTCTTTCACACACTGCAAGTAAAGAATTGAGTACTGATAGGATTTTGCTGTTGCCGAGAAGGGAACTTGCTGTGTCTGTGAGGGATTTGTGTTGGAGAGGCTGAGGTCAGTGTGAAGAGTGAGAAGTGCTGCCTGGTGCTGGGAGGTGCCCTTTGGAGTTGGCCGTCTGCTCTGCCCCATACACTGCTGCTCTGTAGGGCACGAGCTGTGCCCAGTGAACCCGGAGCACTCCACCCAACCCTTCCCTCGAGCATCCTGCTGGCAGTGCTACCAGGGCTAGCTCATATCCCCTGTGTGCATGGCACTGAGCACGACCTGGCAGAGTTCCTTGGCAGCTCCCTGCTCTGGAGGCTGGCGCCTGCTGGCTGCAGGGAGAGGACTTGCTGCTGCAGAAGGGGTGAGAGCAGCCCTGGCCAGGCAGTGAGTGCAGGAGGGTTCTCAGTGCTGCTGCGAAGGGAAAACCAACTCTGGACCATTTTTCCTCCACGCTCAGCAGTGTATCAGCATCAGCTGTCATCCGATGGCAGCAGCAGTGCTAGGAGACACTGAGCAACACCTCTGCTGGCAGCTGGTGTGGGTGGGAGGATGCGGGTGTTCCAGGAGGTGTTGGCATGTAGCTGCTTTCAGAGTTCCTGGCATGGCTTCTGTGCTGTATGCAGCTGCTGCTGCTGTCCGGCTGTGCTCGGTGAGCTCTGAGGGCAGGGAAGGGCCCAGCTGTGAGCCAGGCTTCCCCTGCTCTGCACATCCTCTGCTGAAAGAAAGGGTGGGCACAAGGCTGCTGTGCTGGGTTGCCCTTGGGTTTCAGGAGCCTCTGTGCTGGGCTCTGCTCATTCCTGCCTGACGAGCTTCAGGTGGTGTAGAGATGGCAGCCTGGGCAGGCACAGACCATCTCCTTCCTGGGCAGTGACCAATCTGTGTGGCTTTGAATGTGAGTCTTTTCATCCTCAGTGCAATTTTGAGCTGCTTCACAGGAATCTTTGAACCCTCAAATAAATTGGGATGGGGGAAAAAAATCTGCTTTTATGTTTCCCCAGTCTGTTTGTTTGTTTGCTTGCTTGCTTTAAATATCTTTGAAGCATTTAAGAAGCATTTAGGGCTGCTGAGATGGGTTGGTCAGCCCAGCTTTGTGCTGATGCAGAGCAGGAAGGAGGCAGCGCTGCTCTCCTGTGCCTCAGGCTGGATGCTGTGCCACAGCCTTCCCTCTATGTGCCTCAGCCCTGTTGTCAGGCACTGTGCGGGGGGGACAGCCAGCTGTGGCCCTCTGAGGCAGAATGCAGGGTGGCCTGGAAGGTGTTTTTCTGTGCTCAGACAGCTAGCTGCTCTGGGGAGCCTTAGCTAGTGAGTTCAGGTTTGTGCTCGGTCTGCTCCGGGGTGTGGATGCTCACTCCCACCAAGGCAGCTGCAGGAAGGTGGGCAGAGGGCTCTGAGTGCTGCAGTCATCCTCAGGGGGGGATGTTTAAGGGAGAAGGGACAACAGGAGTGCTGCCTGAACAGGGATGGGGGCTCTTAGATGGAGACTTAGGACATCTGAAGGATGCATTATCTTTGTGATGACTCTTTTCTAATTTCTCTGAGTAACCTCTGCTGTTGCAGCTGCTAAATCACTCCAGCAGCGCTGATGGGGGGTGATGAACCTCTGAGTCATTTGGAATCGAATCAGGTTATTTAGCACTCAACTCAGACCATCCCAGCATTAGCTTTGTGGGGTTTATAAAAAACCATTCTTCCCAAAGTCTGAGTAGTATTCAGTTCTCTCTTTTGCTTTGTACATGAGCCTCCTTCCCAGTGTCGGTGTTCAGTGCAGCTTTGGTGTTAAGTTCGGTGCTCAGACTTCTCAGCTCAGAGCAGAGGAAATGCTTCAGGGCTGGAGGAAAGGATGTTGTGCTAATGGAACTCAGGTGCTTGTTTCATCTTGGTGCCAGGGGAGGCAGGGAAGGAGGAGCAGGGAAGGAGCCTGTTCTTGAATCCTTTGGCAGAAGAGGCACAACGTGGCCTTTGGCAAAGCCATCCCTTAAATGAAGGGACCTCTTGTTGTGGGAGAGCGGCTTCATGGAAGTGGTCAGCTCAGTTCAGCAGCCCAGATGGGAGCTGGGAGCCTGACGTCCCCTCCGGCTGCTGCTCCAGCCCTGCTGTGCCTGCTTCCAGCAGCATGGTTCCCCAGGCAGTTCTCTTTGGTGGCCAGCACACAGGAAATAGCTATGGTTGTGAGAACTTTGTCCAACAGTGCAGTGCTACCTTTAGGATCAAGATACCCCTGTTTGGTTCTACTTGCAGCGTGGCAGGCAAGTCCTTCCTCACCCAACTGGAATTACTTCTCATCTTCAAAGGTCTTTGCATGCTTGCCTGTGGTCTGCTTTAGCACTTCACTGGGCAGAGCAAAGCCAGAGCCTCTGGCCCATCAGGCAGCAGAGCTTTGCTTAGCACAGAGACCTGGGAGCTTGTAGGGACCAACCAGAGCTCACACATGTAAATTCCTATGTGACCGAATGTGTCTCAGTAGATAGGAAGCACTGCAGGCTGGTGGCTGATGCACGACAGCAAACAGGAGGGAGGGATGAAGAATATTTCCCCCTTTTCTGTGGGATTTTGTGGCCTTTGATCACTGCATGTCTCCAGTGTGTATCATTCTTTCTCTTGCCCTGTCGGACACAGCTGCTGTAATTGGGCTTGTTTGGCTGCTGAAGGTGTTGCCTGTGTTAATTATTGCCTGTCACTTTCTAGCTCAGACTCGGTTCCTTTCTGATCTCTGCTCGTTCAATGTGAGCTGGTAAAGGAAGACCAGAGGTCATGAGGCTCTGCTACCTCCTGGCAGAGAAAGTCTTGCTCATAGAAGAAAACCAGGTGTTCTTGCCAAGCCTATCCTGGCTGGTCTTGAATTGGCCCCAAGGTTACGTGCCTCCTCCCAGCCTGCTCCACTGGGTTCAGTTTATCTGCCAGAAACTCCTCCTGTCCCCACAGTGCTTAATCCATGGAACCTTGCCTGGGGGAGGCCATGGTTACATGAGGCCACCTCTGGCACAGCTCCAAGCTTTCCGCAAGCTCCAAGGCTTGTATCTGACTCTGGTAGGTGCTGTGTTGTTAGGTGCACTGTGTATCCCCTCTCCTGCAAATACAAATGCAATGCGTTGTTATTTGGCCTGAATTGCCAATGCTTTCTTTGCAAAAAGCCACGTTCCAGCCTCACTCGGAGGATAAATGCCCACTGTGGATGGCTGTGAGGGGGGAACTGGGCTGGGAGACGTGATCAAGGTGACAGCAATCAGTAAGGGTTTGTAAGGCTGTGAGCTGTAGGATCACCTTATACTTGGAGCCTGCAGCTTTCCTGAGCTATGCTGGCTGTGCCCACCCCGACTGTGCTCTGTGGAGCTCCTGGGTGCCACATAGACGTGCAGTGCTGCTGCCATGCAGGGCTTCAGCTGTCAGATGGGATCCTGGAAGATGTAAGATTTGGGTGCCACGTACATAAAATGTCTTCTGCCAGATCAGGGGGGTGAGCATCCTGATTCAAAAGTAACTTCTTGTTAGTGCCTATTGTGTGTACATATGCATTTTTATGATGGAACCGTTTCCCCTTGGGGGAGGGGGGAGGAAGGGGGAAGCCACTGTAATGCTGTTATTCTGGAGGAGGTTTTTGTAGTGCTCAGGATCTTGTCTGGAGGGTTGCTATTTGCTCAGCTGTGTGCTGGTCTGTGTGCCAATGAATACAGCGCTGCAGAGCAAACACCGGAGCCCAATCTTCCCAGCAGAAGAGGTTTTGTTCCCGTCCTTTGGCTTCCAGCTTTGCTATGGAGGGCTGAGAATGCAGGACCTTGCGTGGGTCCAAAGCATTTCTGAGGAAGTCTAATGTGACAACGTGCTGGAAGTGATCTTCCTGCTGCTCTCCCTTAGCTGTGGGTTGGCTTTGTCCTTTATCTGTCCTTTCTCTTGCAAGCCGTACGTGTTCATGGTTTTGTCTGAACCACGGAGCCCTCGTGTAGCTGGTAGGGAGAGAAGGGCTGTTTTAGCCATCCCACCGTGTCTTCAGCCTTAGAAGAGGCCAGAAACGTTGGGATTTTCCTGGTCCTTTCCAATCCAGAAGGTGGGCTGATGAGCAGATGCTCCTTCCCATAGATGGGCACACAAAAGCTCAGTGCCAGCATTTTATGGCTCAGTCATCGTAAATAACTGATACTATTTGCTTTCTCTATTTAGAGGAAAGCATTGTTCTATCCCAATAACATCAACTGGGAAAACAAATGCCAGCATTTATCATGCAAGTGCTGGCACTAATAGAGGTCAAGTGGATTTATAGTACCAGAACCCATTATGTGTTTGAAGACTAATTAAAGCCCTAAATGAGATGCCTGTTCTGCTGGATGCTTTTTTAATTTTTTTCCTTGCTGCTGTGGTTTTTTTTCCTCCTCTTTCCTCTCTGAAGAGCACTGGCTGTAATAATGGAGCACTGGCTGGAATAGGAGATGTCCAGATTAGATGTCAGCAGTGTAAGATTTGAGATGCTCTGTGCTCACTGAGATTGCTGGATTGTATCTCTGCAGTTGTGGCTGGGGTTTACTGAGCTGCCTTTCTCCCCAGCCGACTGCTTGGCTGCTCTAATTGAATCAGATTTAACAGTATTTGGAGCTGTCTGCCAGAACCAGGGATCTGCAATGCCGGGCTCTGTGCAAATGTGGGAGGGCAACGTTCTGGGCTAGAAGAATGTGCCTGAAGGACAAGTTGGTATCTCAGTTGATTTGAGTGTAGAGAGAAATGACCTTTTCGAGTGCTTATGCTGAGATTTGTGCTCTGTGGGGTAACTGCTGCCCCTGAGATGCCATGGGGTCACATCCCTGAGCTGCTGTGTGCTGCTCAGCTGGGAGAGCCAGAGGGAGGGGGGAGCAGTGCTGGCCATTTAACCTTTCCCCAGCAGTCTTCTGTGGAGTTCACTGTCAGCTTTAATTCAGGTACAGCCATCCAGAGGGAGACAGAGTGTTCCAGGCCTGCAAACTGAACTGTCGGTCTCTCTGTGCTTGGGAGCTTGCTTTGTCTATGGAGGAGGCATCTCTCCAGGCTGGAGAGGGGGGAGAGCCTAGGAGTCCTCAAAGCACATGTCAACTTGATGAGAGCTCCTGGCAGGGCTCCCCGAGCTGCTGCTACACATGTTGTGCTCCATCTTGTCAAGGCTGAGATCTCGAGTGCCAGCAGGATACGGGGACTGCCCATGCAGGAACAGAACTGCCCCCTCTTTCTGCCCAGTTTTACACTACTGCAAATCTGAGTGGGGTAATCCATGGCTGTTCTGCGATTAAAAACGCTTCCTTGAGTTCTCTGTGGCTACATCCTGCATGGTAGCAAGGTACTGGGAGAGAATTCATGCTGTGTGAGTGTCTCCTTGGGAGGAACCCAGCTGGTCCTCCCAGTGCCTCACTGCCCCATGGGGACTGGAACCCCATGCAGTGCTGTGCTGAGCAGGTCCTGTCAGAGGCTTTTGCAGAAGAGGCTGATGTGATCTTTTCTTTAAGTGTGATGGTGAAGCCTCAGAAGTCCTGACAAACAGAGCTGCCCTACACCATTCAGCTTGAACAGCACAAGGACAGCAAGGGCTGTGCACTGCCCAACTTCTGGCTATGAGGAATGATTGGAAATAAAGCATGCTGTGTCTGTGCCATCACAGGTAGCACGAGGGTGGGGGTCTCTGCATCTCTGCAGAGCATGGATGTGAGAAAGAAGTGTCTGGAGGTGAAGAAATTGGGTTAGTGGCCCTAAGACAGGAAAGTAGGGAGTAGCAGTGAGATGAGGGATGTGAGGGAGCCGGGAGAAGCAAGGATGGCTCCGTTACATCCCTTCGCTCTCTTTCAGTCAACTTCTCCCAGGGTCCATTGCTCCCTCCCAGGTGGGGAAGGGCTGCTTCCAGTTTTAAAACAGAGGAATGTGGAAACCGTTGGACACCCCAGGAACCAAACTGCAGGAGCAAAAAACAAACGTTGAGGAAAAGAAACCCGACCTCTTTACTGGAGAGTTGGGATCACAGGAGGTGGGGGGGGGGGGGGGGGGGGAGTTTAAAAAGCAACAACACCCCCTGAGTGCTGAGAAGGGCAACATCTGAGGAGCTGCAGGAAAACAAGCCATGAATGCAGGCAGTCAGCAGCTGTGCTCAGCTGATGTTCACAAGAAGGTTTCAGCTCGCTCTTATTAGAGACCTCAGCAAACCTTAAAGACAGAGCGAGCATTTAGAAATGCCCCTGAGGTTTTCGGTTACTGTGCAGTTGGCTTGGTAAACATGCCAATAAATACTGGAGGGAGAAGAGAAAAGCTTACAGAGGAACAGACACGGGTTTTCAGCTGCTCAGTCTGCTGCGTCCACCGCTGTCGGTTGGTGCTGGGGAGGAGGAGGCGGACGGGGATGCCTGGATGGCATTGGGGCTGTGGGTACTGCTGGGAGAAGGGACTTTGGAGGAGGTTGGGGCAGCACACGCCATCTGGAGCTGTCTGGGGGACCGTCCTGCCTGGGGACGGAGAGCTGATGGGACCGCTTCCATTGCGGTGCGCTTGTGAGTATGGGGCTCTCTCTGCTCTGCTGGAAGATGGGTGTGCGTGGGCTCTGGAGTGATGGGGGGGGAATGGAACTGGGTGTGTTTGGGGCCCCTCTTGGCCTTGTGGCTGGTTTTGTTTTGTTCTGGAAGCAGATAGCTGAGTTGGGATGCTTGGAGTTGGGTTTGTAGTTCCTCTCTTGGCTCAGCTGAATGTGAGGTCTGTGCTGTAGCTGAGGAACATCAGCACCCAAACAACTGGAAAAGGTGAATTGTTCTGTGTGCCCTAATTGCTGGGGCAATCTGAGTACGTATATTTAATTAACAAAGGAGGAAGGCAGGTTTTCTCAGATCAGAGATTGATGGTTTCTGGCCAATGGTTTAATGCTATTGTGAATGTACCAAAGCACCTGAGGACAGGGGTGTATAATTAACAGCTCTTCAGGCCATTAGAAGTGACACGTGTTTATCCAATCAGGCACACGCTGCCTCTCCAGGGCTCTCCTGGAAGCAGTCATTAGGAGCTGCTGTGACGCACGCTGGCTTCCAGGTGCCCACCTCACCTCTTGGGCATCACCATCAGACCTACGTGTGCCATCTGGCTTAGCTTACTTTGCTCTCCTGGCAACGTGGGAGGAGACCCCTCCGTCCTGCTGGTGCCCATGGGTGAGGGGGGGGTGTTGTGCATCCCACCGGGGACCTCAGCTTTAGCAAAGATGTGGTAGCTTAGTTAACATAAGCCAAGGGCTGAAATAGAAATGGTAAGGTAGTGAGCTTTGTGTTCTTCACCGAGGGCAGGCGAGGCTGTGGGATAAGCAGTGGTGCTGTTTAGACACTGGTGGGAAACCGAGGGACCCTTGGGCTCAATGAGTTTGCTGTTGCAGGAACTGCTCGCAGCTCGGTGGTTTCCGTTCTCAGGGCTCTGCACGAGGATGGCTTTGAGCTCACATGCTCTCCTCACCCTCGTCCAGGACATCCCCCTGAGCTTTGGACTTGAGGTCCCATGACAACAACTGCCATGTTTCTCTTTCTGCTGTTCTCGGTGTTGCTGATGTGGGGCGTCGCATGGCTCTCAGCTACATCAAACTGTCAGCAAAGACCAGGGATGTGGAGCAGAAGGCAGGAAGGGCAGAAGCTTTCCCAGCTGTGTTAAAGGCATCCCAGGGCTGCTCGCTTTGTGCTGGTAGTGAGGGGAGGGCAGCTGGAGGGAGACTTGCAGCTAATGGGAGTCTGAAGAACAGAGGTCTGGTTTGAAGCCCCTCTGTTATCATTAGGGTATTGCATTTGAGTTAATTGTATGAAATATCATGTATCACAAAATGCTTTCAAATTTAACGACTTGTCAAGGGGAAGTTTCCATCTTCTTGATGCTAGGCCCATGAAAGTGTGCTCTTTCACTCAGTTTTCCAGCCCTTGTGACTGTAGAGAAAGGCTATGAGCTGCGTCCCAGACGCATTCTTAAAGCTAAAAACATGAAGATAAAGCAACAATCCCACGCGTTGTGTTTTTGTTATGACTTCTCTCAGTGCCAGCCTCCTGACTTCTCATGCTTGAGGTGGGGGCTGTAGCTCTGGGATTGCAGAGCTGAGACCCACGGCCACAGTGCGGCCCCACTGCTGGTTTGTGCAGCTCTGGCTGTTGCTGACTGTGCTGTGATGGCGCTTTGAAAAAGATTCAAAACAACAGAGAGAAAACACATCTGAATCTCAAGGACAGTGTGCAGCTGCAGCATCCCATCCGTCCGACTTTGCAGCAATGGGAGCTGAGGGGCTGCCCTGCTTCGAACCTATCTGTGACACCTCCTGATGTGAGAGTGCGTTGTTTTGCAG
Seq C2 exon
GAGCCAGGCCCAAGAGAGTCCAAAGAAACAGCATGGACAGCTTAGACCTCCTCAAGTTCCCTTCTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001797:ENSGALT00000002770:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.326 A=NA C2=0.958
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(39.7=53.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]