GgaEX0002179 @ galGal4
Exon Skipping
Gene
ENSGALG00000001797 | GPSM1
Description
G-protein signaling modulator 1 [Source:HGNC Symbol;Acc:HGNC:17858]
Coordinates
chr17:7925393-7954943:-
Coord C1 exon
chr17:7954788-7954943
Coord A exon
chr17:7953552-7953660
Coord C2 exon
chr17:7925393-7925552
Length
109 bp
Sequences
Splice sites
3' ss Seq
AGCAGCTTCCTGTCTTGCAGGGT
3' ss Score
7.68
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GAAGACACTCCAGCTCTCCAGACAACTCAAAGACCAAGCAGTAGAAGCCCAGGCTTGCTACAGTCTTGGAAACACGTACACACTGCTTCAAGACTATGAGAAAGCAATTGAATACCATCTAAAACACCTGGTGATAGCACAGGAGCTGGGAGACAG
Seq A exon
GGTGGGAGAGGGAAGGGCCTGCTGGAGTCTCGGAAATGCCTACGTCTCCCTGGGGAGCCATGAACAAGCTTTGCACTTTGCAAGGAAGCATCTCGAAATCTCCCAAGAG
Seq C2 exon
AAGATCAACCGGACCCCTTCGGATGAGGAATGCTTCTTTGACCTGCTGAGCAAGTTCCAGAGCAACCGGATGGACGATCAGCGCTGCCCGCTGGAGGAGTGCCCGTCGGAGGCTGCGGAGGCAGCAGCCACACCAGTCCCAGCCCTGGAAGAACGGATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001797_MULTIEX1-4/7=3-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.574
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(61.5=90.6)
A:
PF134241=TPR_12=PU(56.9=89.2)
C2:
PF0218812=GoLoco=WD(100=42.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAACACGTACACACTGCT
R:
GTATCCGTTCTTCCAGGGCTG
Band lengths:
250-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]