BtaEX6047144 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018799 | GPSM1
Description
G-protein signaling modulator 1 [Source:HGNC Symbol;Acc:HGNC:17858]
Coordinates
chr11:103850620-103853018:+
Coord C1 exon
chr11:103850620-103850775
Coord A exon
chr11:103851814-103851922
Coord C2 exon
chr11:103852895-103853018
Length
109 bp
Sequences
Splice sites
3' ss Seq
TCAGTTTCCCTCCCTGGCAGAGT
3' ss Score
8.25
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GAAGACGCTGCAGCTGTCCCGGCAGCTCAAGGACCAGGCGGTGGAGGCGCAGGCCTGCTACAGCCTGGGCAACACGTACACGCTGCTGCAGGACTACGAGCGTGCAGCCGAGTACCACCTCCGGCACCTGCTCATCGCCCAGGAGCTGGCTGACAG
Seq A exon
AGTGGGCGAGGGCCGGGCATGCTGGAGCCTGGGGAACGCCTACGTATCCATGGGGAGCCCGGCCCAGGCCCTGACCTTTGCCAAGAAGCACCTGGAGATCTCCCAGGAG
Seq C2 exon
ATCGGGGACCGCAGCGGGGAGCTCACGGCCCGCATGAACGTGGCGCAGCTGCAGCTGGCTCTGGGCCGGCTGGCCAGCCCGGCGGCCGCGGAGAAGCCAGACCTGGCCGGCTATGAGGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018799-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.333
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(60.8=90.6),PF134241=TPR_12=PU(2.9=3.8)
A:
PF134241=TPR_12=FE(51.4=100)
C2:
PF134241=TPR_12=PD(42.9=71.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTCAAGGACCAGGC
R:
CTCATAGCCGGCCAGGTCT
Band lengths:
252-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]