RnoEX0039695 @ rn6
Exon Skipping
Gene
ENSRNOG00000018666 | Gpsm1
Description
G-protein signaling modulator 1 [Source:RGD Symbol;Acc:628682]
Coordinates
chr3:3777628-3779733:+
Coord C1 exon
chr3:3777628-3777783
Coord A exon
chr3:3778516-3778624
Coord C2 exon
chr3:3779610-3779733
Length
109 bp
Sequences
Splice sites
3' ss Seq
GATCGTCTAACCATCCACAGGGT
3' ss Score
7.55
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GAAGACGCTGCAGCTGTCTCGGCAGCTCCGGGACCAGGCCGTGGAAGCACAGGCTTGCTACAGTCTGGGGAACACCTACACACTGCTGCAGGACTACGAGCGGGCTGCTGAGTACCACCTGCGGCACCTTGTCATTGCCCAGGAGCTGGCTGATAG
Seq A exon
GGTGGGAGAGGGCCGAGCTTGCTGGAGCCTGGGGAACGCCTACGTGTCCATGGGGAGCCCCGCACAGGCCTTGACCTTTGCCAAAAAACATCTGCAGATCTCCCAGGAG
Seq C2 exon
ATTGGAGACCGAAATGGAGAGCTCACGGCCCGCATGAATATTGCTCACCTGCAGCTGGCACTGGGCCGGCTGACTAGCCCTGCGGCGGCAGAGAAGCCAGATCTGGCTGGCTATGAGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018666-'16-12,'16-11,18-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.294
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(61.5=90.6)
A:
PF134241=TPR_12=PU(50.0=86.5)
C2:
PF134241=TPR_12=PD(46.9=71.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCCGTGGAAGCACAG
R:
TGCCTCATAGCCAGCCAGATC
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]