GgaEX0002179 @ galGal3
Exon Skipping
Gene
ENSGALG00000001797 | GPSM1
Description
NA
Coordinates
chr17:8614492-8643862:-
Coord C1 exon
chr17:8643707-8643862
Coord A exon
chr17:8642471-8642579
Coord C2 exon
chr17:8614492-8614651
Length
109 bp
Sequences
Splice sites
3' ss Seq
AGCAGCTTCCTGTCTTGCAGGGT
3' ss Score
7.68
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GAAGACACTCCAGCTCTCCAGACAACTCAAAGACCAAGCAGTAGAAGCCCAGGCTTGCTACAGTCTTGGAAACACGTACACACTGCTTCAAGACTATGAGAAAGCAATTGAATACCATCTAAAACACCTGGTGATAGCACAGGAGCTGGGAGACAG
Seq A exon
GGTGGGAGAGGGAAGGGCCTGCTGGAGTCTCGGAAATGCCTACGTCTCCCTGGGGAGCCATGAACAAGCTTTGCACTTTGCAAGGAAGCATCTCGAAATCTCCCAAGAG
Seq C2 exon
AAGATCAACCGGACCCCTTCGGATGAGGAATGCTTCTTTGACCTGCTGAGCAAGTTCCAGAGCAACCGGATGGACGATCAGCGCTGCCCGCTGGAGGAGTGCCCGTCGGAGGCTGCGGAGGCAGCAGCCACACCAGTCCCAGCCCTGGAAGAACGGATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001797_MULTIEX1-5/8=4-C2
Average complexity
C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.574
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(61.5=90.6)
A:
PF134241=TPR_12=PU(56.9=89.2)
C2:
PF0218812=GoLoco=WD(100=42.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAACACGTACACACTGCT
R:
GTATCCGTTCTTCCAGGGCTG
Band lengths:
250-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]