GgaEX0002178 @ galGal3
Exon Skipping
Gene
ENSGALG00000001797 | GPSM1
Description
NA
Coordinates
chr17:8639749-8646183:-
Coord C1 exon
chr17:8646041-8646183
Coord A exon
chr17:8645047-8645170
Coord C2 exon
chr17:8639749-8639875
Length
124 bp
Sequences
Splice sites
3' ss Seq
ATTGCTCTGCTTCCTTGCAGGAG
3' ss Score
10.63
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
Exon sequences
Seq C1 exon
ATAGGTGAAGCCAGAGCGCTCTATAACATAGGAAATGTTTACCATGCGAAGGGAAAGCATTTATCTTGGAACATGGCCCAAGACCCGGGCTACCTGCCTCAAGAAGTCAAGGAGACGCTACAGAAAGCTTCAGAATACTATGA
Seq A exon
GAGGAACCTGTCCCTGGTGAAGGAGCTGGGGGACAGAGCTGCACAGGGCCGTGCTTATGGCAACCTTGGCAACACGCAGTACCTGCTTGGCAACTTCAGCGAGGCCATCGCCTTCCACAAGGAG
Seq C2 exon
ATCGGGGACCGGACCGGAGAGCTGACGGCACAGGTGAACATGGCCCAGCTCAGGGCAGCCCTCGGCTTGGGCCCCGGTGATGAGGAGGTGGGCATGGCTCGTCCTTACTCTGGCTATGAGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001797_MULTIEX1-2/8=1-6
Average complexity
C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.326
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(33.3=43.8),PF134241=TPR_12=PU(21.0=27.1)
A:
PF134241=TPR_12=FE(66.1=100)
C2:
PF134241=TPR_12=PD(39.7=53.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAAGCCAGAGCGCTCTAT
R:
TAGCCAGAGTAAGGACGAGCC
Band lengths:
256-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]