HsaEX0028463 @ hg19
Exon Skipping
Gene
ENSG00000160360 | GPSM1
Description
G-protein signaling modulator 1 [Source:HGNC Symbol;Acc:17858]
Coordinates
chr9:139231378-139232418:+
Coord C1 exon
chr9:139231378-139231529
Coord A exon
chr9:139231898-139232021
Coord C2 exon
chr9:139232303-139232418
Length
124 bp
Sequences
Splice sites
3' ss Seq
CAGAGGCACTCGGCCCCCAGGAG
3' ss Score
3.63
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTTGGGGAGGCGAGGGCCCTCTACAACATCGGGAACGTGTACCACGCCAAAGGCAAGCAACTGTCCTGGAACGCCGCAAACGCCACGCAGGACCCCGGGCACCTGCCGCCCGATGTCCGAGAGACCCTGTGCAAGGCCTCCGAGTTCTACGA
Seq A exon
GAGGAACCTGTCCCTGGTGAAGGAGCTGGGCGACCGTGCGGCGCAGGGCAGGGCCTACGGCAACCTGGGCAACACCCACTATTTGTTGGGGAACTTCACAGAGGCCACGACCTTCCACAAGGAG
Seq C2 exon
CGCCTGGCCATTGCTAAGGAGTTTGGAGACAAGGCAGCCGAGAGGAGGGCCTACAGCAACCTGGGGAACGCCCACGTCTTCCTGGGGCGCTTTGACGTGGCCGCCGAGTACTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160360_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(34.4=41.2),PF134241=TPR_12=PU(14.0=15.7)
A:
PF134241=TPR_12=FE(71.9=100)
C2:
PF134241=TPR_12=PD(10.5=15.4),PF134241=TPR_12=PU(38.0=76.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTCTACAACATCGGGAAC
R:
TTGTAGTACTCGGCGGCCA
Band lengths:
253-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)