DreEX0035861 @ danRer10
Exon Skipping
Gene
ENSDARG00000054874 | gpsm1b
Description
G-protein signaling modulator 1b [Source:ZFIN;Acc:ZDB-GENE-110203-5]
Coordinates
chr5:70970872-70974141:-
Coord C1 exon
chr5:70973999-70974141
Coord A exon
chr5:70972446-70972569
Coord C2 exon
chr5:70970872-70970987
Length
124 bp
Sequences
Splice sites
3' ss Seq
ATGTGTATGTATGTGTTCAGGAT
3' ss Score
7.46
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
GTGGGTGAAGCGCGGGCTCTGTATAACATAGGGAACGTGTTTCATGCTAAAGGCAAGCAGCAGCTGTGGGGCGTCTGTCAGGAGCGTGGAGATCTGCCTCCAGACGTCAGAGAAACACTGCAGAGAGCCACGGCCTTCTACGA
Seq A exon
GATGAATCTGTCTCTGGTGAAGGATTTGGGGGATCGGGCCGCTCAGGGAAGAGCTTTCGGGAACCTGGGTAACACTCATTACCTGCTGGGCAACTTTGTGGAGGCCATCAAGTTCCACCGAGAG
Seq C2 exon
CGTCTTGCCATTGCGAAGGAGTTTGGCGATAAAGCAGCAGAGCGAAGGGCTTACAGTAACCTGGGAAATGCTCTGATATTCCTGGGCCAGTTCAGCGCCGCCACTGAATACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000054874-'5-7,'5-6,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(35.6=43.8)
A:
PF134241=TPR_12=PU(40.0=71.4)
C2:
PF134241=TPR_12=FE(50.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCGGGCTCTGTATAACATA
R:
CTGTAGTATTCAGTGGCGGCG
Band lengths:
250-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]