BtaEX6047147 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018799 | GPSM1
Description
G-protein signaling modulator 1 [Source:HGNC Symbol;Acc:HGNC:17858]
Coordinates
chr11:103849287-103850287:+
Coord C1 exon
chr11:103849287-103849429
Coord A exon
chr11:103849658-103849781
Coord C2 exon
chr11:103850172-103850287
Length
124 bp
Sequences
Splice sites
3' ss Seq
CACACGCACTGGGCCTCCAGGAG
3' ss Score
4.99
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTCGGGGAGGCGAGGGCTCTGTACAACATTGGCAATGTGTACCATGCCAAGGGCAAGCAGCTGTCCTGGACTGCCGCACAGGACCCGGGGCACCTGCCGCCTGCTGTCCGCGAGACACTGCGCCGGGCTTCCGAGTTCTATGA
Seq A exon
GAGGAACCTGTCCCTGGTGAAGGAGCTGGGTGACCGGGCGGCCCAGGGCAGGGCCTATGGCAACCTGGGGAACACCCACTACCTGCTGGGCAGCTTCGCAGAAGCCACGGCCTTCCACAAGGAG
Seq C2 exon
CGCCTGGCCATCGCTAAGGAATTTGGAGACAAAGCGGCAGAGAGGAGAGCCTACAGCAACCTGGGCAACGCGCACATCTTTCTGGGGCGCTTTGACGTGGCCGCTGAGTACTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018799-'10-10,'10-8,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(37.5=50.0),PF134241=TPR_12=PU(18.3=22.9)
A:
PF134241=TPR_12=FE(68.3=100)
C2:
PF134241=TPR_12=PD(10.0=15.4),PF134241=TPR_12=PU(38.0=76.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTCTGTACAACATTGGCA
R:
TTGTAGTACTCAGCGGCCACG
Band lengths:
246-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]