RnoEX0039693 @ rn6
Exon Skipping
Gene
ENSRNOG00000018666 | Gpsm1
Description
G-protein signaling modulator 1 [Source:RGD Symbol;Acc:628682]
Coordinates
chr3:3776126-3777145:+
Coord C1 exon
chr3:3776126-3776268
Coord A exon
chr3:3776661-3776784
Coord C2 exon
chr3:3777030-3777145
Length
124 bp
Sequences
Splice sites
3' ss Seq
TAAAAGACTTGGTCCCTTAGGAG
3' ss Score
3.93
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTTGGGGAAGCGAGAGCACTCTACAACATTGGAAATGTGTACCATGCCAAGGGCAAACAGCTATCCTGGAACGCTGCACAGGACCCTGGGCACCTGCCACCTGATGTCCGTGAGACACTGCACAGGGCCTCTGAGTTCTATGA
Seq A exon
GAGGAACCTGTCCTTGGTGAAGGAGCTAGGCGATCGGGCAGCCCAGGGCAGAGCCTATGGCAACCTGGGTAACACCCACTACCTGCTGGGGAACTTCACAGAAGCTACAACCTTCCACAAAGAG
Seq C2 exon
CGCCTGGCCATTGCTAAGGAGTTTGGAGACAAGGCAGCTGAGAGGAGAGCCTACAGCAACTTGGGCAATGCTCACATCTTCCTGGGGCGCTTTGATGTGGCTGCTGAACATTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018666-'12-8,'12-5,14-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(33.3=43.8),PF134241=TPR_12=PU(18.3=22.9)
A:
PF134241=TPR_12=FE(68.3=100)
C2:
PF134241=TPR_12=PD(10.0=15.4),PF134241=TPR_12=PU(37.2=74.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAGCACTCTACAACATTGGA
R:
GTTCAGCAGCCACATCAAAGC
Band lengths:
242-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]