MmuEX6099693 @ mm10
Exon Skipping
Gene
ENSMUSG00000026930 | Gpsm1
Description
G-protein signalling modulator 1 (AGS3-like, C. elegans) [Source:MGI Symbol;Acc:MGI:1915089]
Coordinates
chr2:26323889-26324913:+
Coord C1 exon
chr2:26323889-26324031
Coord A exon
chr2:26324413-26324536
Coord C2 exon
chr2:26324798-26324913
Length
124 bp
Sequences
Splice sites
3' ss Seq
TCAAAGATTTGGCCCCCTAGGAG
3' ss Score
5.36
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTTGGGGAGGCGAGAGCACTCTACAACATTGGAAATGTGTACCACGCCAAGGGCAAACAGCTTTCCTGGAATGCTGCACAGGACCCCGGGCACCTGCCACCTGATGTCCGCGAGACACTGCACAGGGCCTCTGAGTTTTATGA
Seq A exon
GAGGAACCTGTCTTTGGTGAAGGAACTAGGCGACCGGGCGGCCCAGGGCAGGGCCTATGGCAACCTGGGTAACACCCACTACCTACTGGGAAACTTCACGGAGGCCACAACCTTCCACAAAGAG
Seq C2 exon
CGCCTGGCCATCGCCAAGGAGTTTGGGGACAAGGCAGCTGAGCGGAGGGCCTACAGCAACCTGGGCAATGCTCACATCTTCTTGGGGCGCTTTGATGTGGCTGCTGAACATTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026930-'11-11,'11-9,13-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.228 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(33.3=43.8),PF134241=TPR_12=PU(18.3=22.9)
A:
PF134241=TPR_12=PU(34.4=52.4)
C2:
PF134241=TPR_12=PD(10.0=15.4),PF134241=TPR_12=PU(37.2=74.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAGCACTCTACAACATTGGA
R:
GTTCAGCAGCCACATCAAAGC
Band lengths:
242-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types