GgaEX0002181 @ galGal3
Exon Skipping
Gene
ENSGALG00000001797 | GPSM1
Description
NA
Coordinates
chr17:8614492-8639875:-
Coord C1 exon
chr17:8639749-8639875
Coord A exon
chr17:8629627-8629697
Coord C2 exon
chr17:8614492-8614651
Length
71 bp
Sequences
Splice sites
3' ss Seq
GAGAGTGCGTTGTTTTGCAGGAG
3' ss Score
5.41
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ATCGGGGACCGGACCGGAGAGCTGACGGCACAGGTGAACATGGCCCAGCTCAGGGCAGCCCTCGGCTTGGGCCCCGGTGATGAGGAGGTGGGCATGGCTCGTCCTTACTCTGGCTATGAGGCACAAG
Seq A exon
GAGCCAGGCCCAAGAGAGTCCAAAGAAACAGCATGGACAGCTTAGACCTCCTCAAGTTCCCTTCTGAAAAG
Seq C2 exon
AAGATCAACCGGACCCCTTCGGATGAGGAATGCTTCTTTGACCTGCTGAGCAAGTTCCAGAGCAACCGGATGGACGATCAGCGCTGCCCGCTGGAGGAGTGCCCGTCGGAGGCTGCGGAGGCAGCAGCCACACCAGTCCCAGCCCTGGAAGAACGGATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001797_MULTIEX1-7/8=6-C2
Average complexity
C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.326 A=0.958 C2=0.574
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(39.7=53.5)
A:
NO
C2:
PF0218812=GoLoco=WD(100=42.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACGGCACAGGTGAACATG
R:
CTCTGGAACTTGCTCAGCAGG
Band lengths:
168-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]