BtaEX6047142 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018799 | GPSM1
Description
G-protein signaling modulator 1 [Source:HGNC Symbol;Acc:HGNC:17858]
Coordinates
chr11:103852895-103859860:+
Coord C1 exon
chr11:103852895-103853018
Coord A exon
chr11:103858927-103858997
Coord C2 exon
chr11:103859681-103859860
Length
71 bp
Sequences
Splice sites
3' ss Seq
CCGGGCCTGCTCTCTTGCAGGGG
3' ss Score
9.78
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
ATCGGGGACCGCAGCGGGGAGCTCACGGCCCGCATGAACGTGGCGCAGCTGCAGCTGGCTCTGGGCCGGCTGGCCAGCCCGGCGGCCGCGGAGAAGCCAGACCTGGCCGGCTATGAGGCCCAAG
Seq A exon
GGGCCAGACCCAAGAGGACGCAGAGGCTGAGTGCGGAGACCTGGGACCTGCTGAGACTACCCCTGGAGCGG
Seq C2 exon
GAGCAAAATGGAGACAGCCACCACGCGGGGGACTGGCGGGGGCCCAGCAGGGACTTGCTCCCTCTCCCCGTGAGGAGCAGGAAGTACCAAGAAGGGCCTGACGCGGCTGAGAGGAGGCCGCGGGAGGGCAGCCATTCCCCGCTGGACAGCGCAGACGTCCGGGTGCAGCTGCCTCGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018799-'16-18,'16-16,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.583 C2=1.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(42.9=71.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCATGAACGTGGCGCAG
R:
TGGTACTTCCTGCTCCTCACG
Band lengths:
183-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]