DreEX0035858 @ danRer10
Exon Skipping
Gene
ENSDARG00000054874 | gpsm1b
Description
G-protein signaling modulator 1b [Source:ZFIN;Acc:ZDB-GENE-110203-5]
Coordinates
chr5:70967888-70968501:-
Coord C1 exon
chr5:70968387-70968501
Coord A exon
chr5:70968120-70968190
Coord C2 exon
chr5:70967888-70967983
Length
71 bp
Sequences
Splice sites
3' ss Seq
TGGTGTGTTTCCTCTGACAGGAG
3' ss Score
9.26
5' ss Seq
AAGGTCACA
5' ss Score
1.86
Exon sequences
Seq C1 exon
ATCAGTGATTGTAACGGAGAGCTGACGGCGAGGCTGAATGTGGAGGAGCTGATGGAGGCGCTCGGGGTTAAAGAGGACGAACTCTCGCCTACAGAACCACACTTTAAACTGCAGG
Seq A exon
GAGCCAGACCCAAACTCAGCAAGAAGAGCAGCATGGAGAGTGTGGAGCTGTGGAAGTTCAGCGCTGAGAAG
Seq C2 exon
AATGGGGATGCAGCAGATGTGTGTGTGTCGCGCAGCAGCAGGAGTCTTCAGTCAGCAGTGGACACTGAGGACATCACTGTCAGCGTCACCCCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000054874-'19-22,'19-21,20-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=0.194 C2=0.375
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(42.4=64.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGAGGAGCTGATGGAGG
R:
GTGACGCTGACAGTGATGTCC
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]