RnoEX0039697 @ rn6
Exon Skipping
Gene
ENSRNOG00000018666 | Gpsm1
Description
G-protein signaling modulator 1 [Source:RGD Symbol;Acc:628682]
Coordinates
chr3:3779610-3786880:+
Coord C1 exon
chr3:3779610-3779733
Coord A exon
chr3:3785953-3786023
Coord C2 exon
chr3:3786701-3786880
Length
71 bp
Sequences
Splice sites
3' ss Seq
TGGGCTGTGATCTCTTCCAGGAG
3' ss Score
8.89
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
Exon sequences
Seq C1 exon
ATTGGAGACCGAAATGGAGAGCTCACGGCCCGCATGAATATTGCTCACCTGCAGCTGGCACTGGGCCGGCTGACTAGCCCTGCGGCGGCAGAGAAGCCAGATCTGGCTGGCTATGAGGCACAAG
Seq A exon
GAGCAAGACCCAAAAGGACACAGAGGCTGAGTGCGGAGACCTGGGACCTGCTGCGGCTCCCCCTGGACCGG
Seq C2 exon
GAGCAAAATGGAGAGACCCACCACACAGGGGACTGGAGGGGTCCAAGCAGGGACTCGCTTCCTCTCCCCATGAGGAGCAGGAAGTACCAGGAAGGTCCAGATGCCATTGAGAGGAGACCCCGGGAGGGTAGCCACTCTCCACTGGACAGTGCTGATGTAAGGGTACAGGTGCCTCGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018666-'19-15,'19-14,26-15
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=0.583 C2=1.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(46.9=71.4)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000067840fB6192
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATTGCTCACCTGCAGCTGG
R:
TACTTCCTGCTCCTCATGGGG
Band lengths:
173-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]