MmuEX6099690 @ mm10
Exon Skipping
Gene
ENSMUSG00000026930 | Gpsm1
Description
G-protein signalling modulator 1 (AGS3-like, C. elegans) [Source:MGI Symbol;Acc:MGI:1915089]
Coordinates
chr2:26327292-26344758:+
Coord C1 exon
chr2:26327292-26327415
Coord A exon
chr2:26339636-26339706
Coord C2 exon
chr2:26344602-26344758
Length
71 bp
Sequences
Splice sites
3' ss Seq
CTGGCTGTGATCTCTTCCAGGAG
3' ss Score
9.47
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
Exon sequences
Seq C1 exon
ATTGGAGACCGAAACGGAGAACTGACAGCCCGCATGAATATTGCCCACCTGCAGCTGGCCCTGGGCCGGCTGACTAGCCCAGCAGCAGCGGAGAAGCCAGATCTGGCTGGCTATGAGGCACAAG
Seq A exon
GAGCAAGACCCAAACGGACACAGAGGCTGAGTGCCGAGACCTGGGACCTGCTGCGGCTCCCCCTGGACCGG
Seq C2 exon
GGTATTCCCAGGGCCCCGTCTTCTGACGAGGAGTGTTTCTTTGACCTGCTGAGTAAGTTCCAGAGCAGTCGCATGGATGACCAGCGCTGTCCCCTGGAGGAAGGCCAGGCTGGGGCTGCTGAGGCCACAGCTGCCCCATCCGTGGAGGATAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026930_MULTIEX2-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.381 A=0.583 C2=0.664
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(46.9=71.4)
A:
NO
C2:
PF0218812=GoLoco=WD(100=43.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCATGAATATTGCCCACCT
R:
CATGCGACTGCTCTGGAACTT
Band lengths:
170-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types