MmuEX6099690 @ mm9
Exon Skipping
Gene
ENSMUSG00000026930 | Gpsm1
Description
G-protein signalling modulator 1 (AGS3-like, C. elegans) [Source:MGI Symbol;Acc:MGI:1915089]
Coordinates
chr2:26182812-26196104:+
Coord C1 exon
chr2:26182812-26182935
Coord A exon
chr2:26195156-26195226
Coord C2 exon
chr2:26195925-26196104
Length
71 bp
Sequences
Splice sites
3' ss Seq
CTGGCTGTGATCTCTTCCAGGAG
3' ss Score
9.47
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
Exon sequences
Seq C1 exon
ATTGGAGACCGAAACGGAGAACTGACAGCCCGCATGAATATTGCCCACCTGCAGCTGGCCCTGGGCCGGCTGACTAGCCCAGCAGCAGCGGAGAAGCCAGATCTGGCTGGCTATGAGGCACAAG
Seq A exon
GAGCAAGACCCAAACGGACACAGAGGCTGAGTGCCGAGACCTGGGACCTGCTGCGGCTCCCCCTGGACCGG
Seq C2 exon
GAGCAGAATGGAGAGACCCACCACACAGGGGACTGGAGGGGTCCAGGCAGGGACTCGCTTCCCCTCCCCATGAGGAGCAGGAAGTACCAGGAAGGTCCAGATGCCATTGAGAGGAGACCCCGGGAGGGTAGTCACTCTCCACTGGACAGTGCTGATGTAAGGGTACAGGTGCCTCGTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026930-'12-19,'12-18,15-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.390 A=0.583 C2=1.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(46.9=71.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATATTGCCCACCTGCAGCT
R:
TACTTCCTGCTCCTCATGGGG
Band lengths:
175-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: