GgaEX0002177 @ galGal3
Exon Skipping
Gene
ENSGALG00000001797 | GPSM1
Description
NA
Coordinates
chr17:8614492-8629697:-
Coord C1 exon
chr17:8629627-8629697
Coord A exon
chr17:8627115-8627294
Coord C2 exon
chr17:8614492-8614651
Length
180 bp
Sequences
Splice sites
3' ss Seq
CTATTTCTTGCTTTCCCAAGGAC
3' ss Score
7.68
5' ss Seq
CCGGTAGGA
5' ss Score
8.18
Exon sequences
Seq C1 exon
GAGCCAGGCCCAAGAGAGTCCAAAGAAACAGCATGGACAGCTTAGACCTCCTCAAGTTCCCTTCTGAAAAG
Seq A exon
GACCAGAATGGGGACAGCCACCACGTGGGAGACCTGAAGATCTTGGGAAAAGAGTTCTTGTCTTTACCTGCGAGGTCGAAGAAATACAGGGAGCACCACCTGGGTTTGGAGAGGAGGCCCCATGGGCAGTGCGCATCGCCCCTGGATAGCAGCCAAGTCCAAGTGCAAGTGCCACAGCCG
Seq C2 exon
AAGATCAACCGGACCCCTTCGGATGAGGAATGCTTCTTTGACCTGCTGAGCAAGTTCCAGAGCAACCGGATGGACGATCAGCGCTGCCCGCTGGAGGAGTGCCCGTCGGAGGCTGCGGAGGCAGCAGCCACACCAGTCCCAGCCCTGGAAGAACGGATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001797_MULTIEX1-8/8=7-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.958 A=0.667 C2=0.574
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0218812=GoLoco=WD(100=42.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCCAAGAGAGTCCAAAGA
R:
GTATCCGTTCTTCCAGGGCTG
Band lengths:
226-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]