HsaEX0028465 @ hg19
Exon Skipping
Gene
ENSG00000160360 | GPSM1
Description
G-protein signaling modulator 1 [Source:HGNC Symbol;Acc:17858]
Coordinates
chr9:139243149-139250298:+
Coord C1 exon
chr9:139243149-139243219
Coord A exon
chr9:139244039-139244215
Coord C2 exon
chr9:139250142-139250298
Length
177 bp
Sequences
Splice sites
3' ss Seq
ACAGCCTTACCCCTCCCCAGGAG
3' ss Score
6.76
5' ss Seq
ACGGTAGGC
5' ss Score
8.81
Exon sequences
Seq C1 exon
GGGCCAGACCCAAGAGGACGCAGAGGCTGAGCGCGGAGACCTGGGACCTGCTGAGACTCCCCCTGGAGCGG
Seq A exon
GAGCAGAATGGAGACAGCCACCATTCAGGGGACTGGCGGGGGCCCAGCAGGGACTCGCTACCCCTCCCCGTGAGGAGCAGGAAGTACCAGGAAGGCCCGGACGCTGAGAGGAGGCCCCGGGAGGGCAGCCACTCCCCGCTGGACAGCGCCGACGTCCGGGTGCACGTGCCACGCACG
Seq C2 exon
AGCATCCCGAGGGCCCCGTCTTCGGACGAGGAGTGCTTCTTTGACCTGTTGACCAAGTTCCAGAGCAGCCGCATGGACGACCAGCGTTGTCCCCTGGACGATGGCCAGGCCGGGGCTGCCGAGGCCACGGCCGCCCCCACCCTGGAGGACAGGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160360_MULTIEX1-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=1.000 C2=0.815
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0218812=GoLoco=WD(100=43.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCCAAGAGGACGCAGAG
R:
CTGTCCTCCAGGGTGGGG
Band lengths:
218-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)