RnoEX0039700 @ rn6
Exon Skipping
Gene
ENSRNOG00000018666 | Gpsm1
Description
G-protein signaling modulator 1 [Source:RGD Symbol;Acc:628682]
Coordinates
chr3:3785953-3790870:+
Coord C1 exon
chr3:3785953-3786023
Coord A exon
chr3:3786701-3786880
Coord C2 exon
chr3:3790714-3790870
Length
180 bp
Sequences
Splice sites
3' ss Seq
ACCTGCCTTTCCCTCTCCAGGAG
3' ss Score
12.97
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GAGCAAGACCCAAAAGGACACAGAGGCTGAGTGCGGAGACCTGGGACCTGCTGCGGCTCCCCCTGGACCGG
Seq A exon
GAGCAAAATGGAGAGACCCACCACACAGGGGACTGGAGGGGTCCAAGCAGGGACTCGCTTCCTCTCCCCATGAGGAGCAGGAAGTACCAGGAAGGTCCAGATGCCATTGAGAGGAGACCCCGGGAGGGTAGCCACTCTCCACTGGACAGTGCTGATGTAAGGGTACAGGTGCCTCGCACG
Seq C2 exon
GGTATCCCCAGGGCCCCGTCCTCTGACGAGGAGTGTTTCTTCGATCTGCTGAGTAAGTTCCAGAGCAGTCGTATGGATGACCAACGCTGTCCCCTGGAGGAAGGCCAGGCTGGGGCTGCTGAGGCTACAGCTGCCCCAACCCTGGAGGAGAGAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018666_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=1.000 C2=0.807
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0218812=GoLoco=WD(100=43.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAAGACCCAAAAGGACACA
R:
GCTCTCTCCTCCAGGGTTGG
Band lengths:
226-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]