BtaEX6047141 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018799 | GPSM1
Description
G-protein signaling modulator 1 [Source:HGNC Symbol;Acc:HGNC:17858]
Coordinates
chr11:103858927-103867412:+
Coord C1 exon
chr11:103858927-103858997
Coord A exon
chr11:103859681-103859860
Coord C2 exon
chr11:103867256-103867412
Length
180 bp
Sequences
Splice sites
3' ss Seq
GCCCAGCCTTCCCCCCTCAGGAG
3' ss Score
7.86
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GGGCCAGACCCAAGAGGACGCAGAGGCTGAGTGCGGAGACCTGGGACCTGCTGAGACTACCCCTGGAGCGG
Seq A exon
GAGCAAAATGGAGACAGCCACCACGCGGGGGACTGGCGGGGGCCCAGCAGGGACTTGCTCCCTCTCCCCGTGAGGAGCAGGAAGTACCAAGAAGGGCCTGACGCGGCTGAGAGGAGGCCGCGGGAGGGCAGCCATTCCCCGCTGGACAGCGCAGACGTCCGGGTGCAGCTGCCTCGCACG
Seq C2 exon
GGCATCCCCCGGGCCCCGTCTCCCGACGAGGAGTGCTTCTTCGATCTGCTGAGCAAGTTCCAGAGCAGCCGCATGGACGACCAGCGCTGCCCGCTGGAGGACGGCCAGCCCGCGGCCGCCGAAGCCACAGCCACCCCAGCCCTGGAGGGGAGGGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018799-'19-19,'19-18,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=1.000 C2=0.774
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0218812=GoLoco=WD(100=43.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCCAAGAGGACGCAGAG
R:
TGGGGTGGCTGTGGCTTC
Band lengths:
204-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]