HsaEX0028465 @ hg38
Exon Skipping
Gene
ENSG00000160360 | GPSM1
Description
G-protein signaling modulator 1 [Source:HGNC Symbol;Acc:HGNC:17858]
Coordinates
chr9:136340870-136355846:+
Coord C1 exon
chr9:136340870-136340993
Coord A exon
chr9:136349587-136349763
Coord C2 exon
chr9:136355690-136355846
Length
177 bp
Sequences
Splice sites
3' ss Seq
ACAGCCTTACCCCTCCCCAGGAG
3' ss Score
6.76
5' ss Seq
ACGGTAGGC
5' ss Score
8.81
Exon sequences
Seq C1 exon
ATCGGGGACCGCCATGGGGAGCTCACGGCCCGCATGAACGTGGCGCAGCTGCAGCTGGTGCTCGGCCGCCTGACCAGCCCGGCAGCCTCAGAGAAGCCTGACCTGGCCGGCTATGAGGCCCAGG
Seq A exon
GAGCAGAATGGAGACAGCCACCATTCAGGGGACTGGCGGGGGCCCAGCAGGGACTCGCTACCCCTCCCCGTGAGGAGCAGGAAGTACCAGGAAGGCCCGGACGCTGAGAGGAGGCCCCGGGAGGGCAGCCACTCCCCGCTGGACAGCGCCGACGTCCGGGTGCACGTGCCACGCACG
Seq C2 exon
AGCATCCCGAGGGCCCCGTCTTCGGACGAGGAGTGCTTCTTTGACCTGTTGACCAAGTTCCAGAGCAGCCGCATGGACGACCAGCGTTGTCCCCTGGACGATGGCCAGGCCGGGGCTGCCGAGGCCACGGCCGCCCCCACCCTGGAGGACAGGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160360_MULTIEX1-2/4=C1-4
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.409 A=1.000 C2=0.815
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(44.4=66.7)
A:
NO
C2:
PF0218812=GoLoco=WD(100=43.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACGGCCCGCATGAAC
R:
CTGTCCTCCAGGGTGGGG
Band lengths:
255-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development