MmuEX0021762 @ mm10
Exon Skipping
Gene
ENSMUSG00000026930 | Gpsm1
Description
G-protein signalling modulator 1 (AGS3-like, C. elegans) [Source:MGI Symbol;Acc:MGI:1915089]
Coordinates
chr2:26339636-26344758:+
Coord C1 exon
chr2:26339636-26339706
Coord A exon
chr2:26340405-26340584
Coord C2 exon
chr2:26344602-26344758
Length
180 bp
Sequences
Splice sites
3' ss Seq
ACCTGCCTTTGCCTTTCCAGGAG
3' ss Score
11.95
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GAGCAAGACCCAAACGGACACAGAGGCTGAGTGCCGAGACCTGGGACCTGCTGCGGCTCCCCCTGGACCGG
Seq A exon
GAGCAGAATGGAGAGACCCACCACACAGGGGACTGGAGGGGTCCAGGCAGGGACTCGCTTCCCCTCCCCATGAGGAGCAGGAAGTACCAGGAAGGTCCAGATGCCATTGAGAGGAGACCCCGGGAGGGTAGTCACTCTCCACTGGACAGTGCTGATGTAAGGGTACAGGTGCCTCGTACG
Seq C2 exon
GGTATTCCCAGGGCCCCGTCTTCTGACGAGGAGTGTTTCTTTGACCTGCTGAGTAAGTTCCAGAGCAGTCGCATGGATGACCAGCGCTGTCCCCTGGAGGAAGGCCAGGCTGGGGCTGCTGAGGCCACAGCTGCCCCATCCGTGGAGGATAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026930_MULTIEX2-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=1.000 C2=0.664
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0218812=GoLoco=WD(100=43.4)
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAAGACCCAAACGGACAC
R:
CCTCCACGGATGGGGCAG
Band lengths:
219-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types