MmuINT0073434 @ mm10
Intron Retention
Gene
ENSMUSG00000026930 | Gpsm1
Description
G-protein signalling modulator 1 (AGS3-like, C. elegans) [Source:MGI Symbol;Acc:MGI:1915089]
Coordinates
chr2:26340405-26344758:+
Coord C1 exon
chr2:26340405-26340584
Coord A exon
chr2:26340585-26344601
Coord C2 exon
chr2:26344602-26344758
Length
4017 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
3' ss Seq
ATGTTTCCCTCCCCACCCAGGGT
3' ss Score
9.59
Exon sequences
Seq C1 exon
GAGCAGAATGGAGAGACCCACCACACAGGGGACTGGAGGGGTCCAGGCAGGGACTCGCTTCCCCTCCCCATGAGGAGCAGGAAGTACCAGGAAGGTCCAGATGCCATTGAGAGGAGACCCCGGGAGGGTAGTCACTCTCCACTGGACAGTGCTGATGTAAGGGTACAGGTGCCTCGTACG
Seq A exon
GTAGGTGCCTCCTGAGTTGAGGGGACATTTGTGACCATGACCACGAAGGCCTTTCTTCCCTCTCTGCCTATCCAGCCTGGAAGCAAGGCAGGGCTGAGCTGGAGACTAAGGGAGGCAGAGCTGTAAACTGCTGGGCCTTCTACCTGGCCTTGTGCATCCAGGTACTCTGAGGGCACAGAGCTCATAACTGTTAGGTGCACCTCAGGGAGCCCTCATAGACACTCCCAAGTCAGCCTTGCTGCAGGTAGGTTCTGTCTCTTTGTGGGACTTGATTTCCACCTTTGTCACTAGTCTTCAGGCAACCTCTGTGTCCCAGGCCCCTTCGTTGCCTTACTGGGACCTTTGAGACCTGGCTGCCCAGGCTGAGGAGCTGAGCTACACAGCTTACTCCAGGTACACTCTCCGCACCTCAGGGGTTGCTTTTGAGGTTCCAGAGTGGCTGGGTACAGGCCCAAACTCAAGGCACCCAGGCAGGGATACCAGTTTGGGAGTTCCTTGGCCTCAAACCTAAGAAGTGGTACAGCCAGCAACCCCATAATGTGCCTCAGAGTCTGAGAAGCCTCCTGGGGAGTCTCCTAAGTTGCAAAGTGGTGGCCCTGAGCTGAGGGATGTGAGGGATGGCTGGAGAAGGATGGGAAGGCCCCAAGTTTGCCCACAGGGCAGGTGCTAAGGGAAAAGAGGGGGCACATGCTCCACCCATGGGGAATGGCATCATGTGGAGGGCATGCTGGGTGGCAGTGCACACTGTTAACCCAGTACGGAAAGGACAGCAGAGAGCTAGCATCTGCCCAGTGTTCTGAAAGGTTTTTGCAGGGAGGTGCCACCTACTCTTCCTGGGCATCCTGATGGACTGCAGACCTGGTAGGAGGTTGGTGTGGCCCAGCAGGGACCCACGGCATAGCCTGGAAGCTCAGACTTCCTGGAGGCACTCAGCTTTCCTGAAATAGTAGGCTGAGTAGCTCAGTGGCCAGATAAAAGACTGGTAGCCAGTGGGTGGAGGGTGGGGCCTGCCAGAGATCCAGAGAAAGAGTCTGTATTTAGGCTTAAGAGTCTCTGTGTAGGACACTCAAGTCCTGAGGCTCTAGGAAGTAGCATGTAACACCCTCTCACTGCCACAGTCTCAGGTGGCCTGTGCTGCATAAGCCTTGGTTATTCTTAGTGCCTGGAGCCCACCCTTCCTGCCAGGGCGGCCGCCTCCAATTCCAGTCCAGCCCACTCTACTCCTATCACAAGGAGCTAGGAAGGGAACACATAGTCTCTTATCCCTGAGCTCAGAGGAAGGTTGTGGTAGAGCCAAGAGGCCACCCTGCCAATGTCAAGGGCTACCCAGGTCAGAATGGGAGTCAGTCTGGGGTGGCCTCAGAAGCAAACCTGAGAGAAGAGACTGGTTCTCTAGGGGCCTAGCTTTAGCTTTGGAAGGACGCCCAGGGGCCCAGGGGTTGGGTGGGAAAGGGCTTTCAAATAAGCTGTCCACCCCCACAGCCTTTAGCATGCCCACCCACAGGCCTCAAGGGGTGTGCTCTGTTGAGCTGGGGGAAGCCAGCTCAGTGTTTACAGAGTGAGGGTGTGTGTGTGTGTGTGTGTGTCTATGTGCATGCGCGCGCATTCAAGCACTTGTGAGCTGCAGCAGCGAGGGCGGGTATTGGGAGAGCCCAGCCTTCTCCCTAGCTCCTATTTAAGCATCAGGCGAAGACCGTGAGTCCCAGGAACGGTGAGGAGGCACTTGGCACTTGGGACAGGTGGTAGCAGCTGTGCCTGACACCTTGGCATCCTGCCTGGGCTACACGTGGCCTAACACCCACACAGTTCCTGATTGCTGCGACTGGAGGGAACCTGTGATCCTGCTGTGAGTGTGGGTCCTTGGACATACAGGGACTTAAGTCAGCCGAGGTAGGGGTGGGCCAGCCCAGGACTGTACACTCCTCTAGGAGCTGGGCTTAACTAAAATAGAAGAGATTGCAGTTAGACATCAAGAGGAACTCAAACCCATGGGAAAGAACCAGGACTTGAGGCAAAGGAGAGATTTAGGTGGTGGATGGTAGACAGGGAGACTTTTCACAGTCCTCACAGGGGCCTATGGTCTCAGACCTCGGCTCATGCTCCTGAGGGGCTATGAGAGGGAGGGGCAGGTCATGAAGCATAGGAAGTCCAAGTTCCCAGACTCCAGCCGGATGTGATTGCACTGTGTCCTGACAGCTCGGGAGCGAGGGCAAGAAGGGTCTCAGAGCAAATCCACATCCTTCAAGAGCTTCTGTCAAGGCAGGAAGTCTGAAGCAGGGGGCAGGGGGAGGAGGGAAGTGGGAGGGTGTGTGTGTGTGTGTGCATGTCTAAACAGACCCGTTCTATGGTGAAGCTTGGACCCTGCAGGCACCAGGCAGCTTTCTTTGAGCAGGTGTCCAATCCTCCAGAGACACCTGTGCAACCCCCACTGGCCTCAGGGAGTGCAGACTAGTCCCTGCTGGGCTTGCAGGCGCCACTCAGCCCAAGTGTTCCCTGTCCTCTGGCTGGGGCTAGGGCTGTCAGTGTTCTTTTCTCTTGGCTCTGATGGTGTCGGGCTGCCAGCCTTATTTAAGTCACAGAAGGACAAAGGTCCTGAAAGCAGCAAGGTCAGCCTGGGGACCGAAGGGTCTTTCTCTTCTCTGCCATGTGACTGTCCATAGCTCCCACAGCTGGGTTCCTATTAACATCAGAATCCTGAACTCAGTCCTAAATTGGCGTTGTTCACCAGGTCTGCTTGTATCTGGATCCCAGCTCTATTCTTACCTCTGTGTGACCTTAGGTAGGCTGTCAAACCTCTGTGCCTGTGCCTCTGTGCACAGAGACATCCCCGGCATGGGCCGGGCCATATGATGGAAATCTTCCTGTGCTCAGAAGAGCCAGACCCTCCCAGTCATTACTTTGTTGCTTTTTGTGTGGACTTTGGAGGGCTGGAGGCAGGTCCCAGTTTCTCACATCAAGCGGTTCTGGAGCCCATCTCATCCCTTGCCAGGCCTGGACTCTAGACCAGGCGTCTGAGGCCCCAGCCTGCAGAGTAAGCCAAAGCCAAGGCCATTCCTCCAGGGATGTGTAAAGTGAGTCTGGAGTGGCACAGCTTGCTCTAGGATGCTCAGGGTTCAGAAGTTTGCAAGCCTCCTCAGCCCCTGTGACTTGCCTAGGCTTAGGGCAGTCATCCCTGACCCAGGCTGTAGGCTACACCCCCACTCACCTACCATACATTGAAGGACAGATCCTGACATTCAGATCTGCCATCCTAGGGTTCCAAAACCTAGTACACACTCCAGAAAGTCCTTCCTCTTCAGGAAGGAACTCTCAGCAGTAGACATCTGTATACCCACCCTCCTATGCAGACCCAGCCCCGGCCCTTTCTGGACAAGGCTTCAGCCACCTGACCCCTCCCCTAGAAAACAGAGCATTCAGGGGTGTTAGCATCTTCCCTCATACACCGGCCCCCACATAGCTGTGTCTTCTGAGCTTCATGCTGTCTAGGACCCATTGTGCGGCAGAAACCCAGGAAGAGGGAAGACCTTCACCCCCGACCTGGGTCTCCACGGGTGATCCTTCCATCATTGCCTCCTGACTGACTTGAGATCACGTACCTGGTGGCCATCCCAGCTCCGTGCTTACAGAGGCTTGCTCACTGGGTGTTAGAGGGAAACAGGATCAGGGCTCGGCACAGAATGGAGCTCTGCATGACTGACAGGGCCCTCCGGGATGGAGTACAGGAGGCTTCCTGAAGGTGGTGGCTTCTGATCAGGCTTGAAGCTGGCTAGAAAGGGCTTGGCCAGGCCAAGGTAGCAGCAAGGCAGGGAAGTAACTGAGTCTGGCTGCGGGGTAGCAGCCACAGAAGTGGAGACAGGAGATGGGACAGATTTGGAGGCATTCTGTTAGGGATGGCAGCACCTGGGAGGGTTCTGCGACCCTAGGTCTTAGAAATGTGTGTTCAGGGTGGGCAGTCCTGCCGAAGGTCTAGGAGGCTGAGGCACAGAGGGCTGAATTGATGTTTCCCTCCCCACCCAG
Seq C2 exon
GGTATTCCCAGGGCCCCGTCTTCTGACGAGGAGTGTTTCTTTGACCTGCTGAGTAAGTTCCAGAGCAGTCGCATGGATGACCAGCGCTGTCCCCTGGAGGAAGGCCAGGCTGGGGCTGCTGAGGCCACAGCTGCCCCATCCGTGGAGGATAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026930:ENSMUST00000066936:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.664
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0218812=GoLoco=WD(100=43.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types