RnoINT0067117 @ rn6
Intron Retention
Gene
ENSRNOG00000018666 | Gpsm1
Description
G-protein signaling modulator 1 [Source:RGD Symbol;Acc:628682]
Coordinates
chr3:3786701-3790870:+
Coord C1 exon
chr3:3786701-3786880
Coord A exon
chr3:3786881-3790713
Coord C2 exon
chr3:3790714-3790870
Length
3833 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
3' ss Seq
GTGTTTCCCTCCCCACCCAGGGT
3' ss Score
10.01
Exon sequences
Seq C1 exon
GAGCAAAATGGAGAGACCCACCACACAGGGGACTGGAGGGGTCCAAGCAGGGACTCGCTTCCTCTCCCCATGAGGAGCAGGAAGTACCAGGAAGGTCCAGATGCCATTGAGAGGAGACCCCGGGAGGGTAGCCACTCTCCACTGGACAGTGCTGATGTAAGGGTACAGGTGCCTCGCACG
Seq A exon
GTAGGTGCTCCTGAGTTGAGGGAACAGTTGTGAGCATGACTACGACGGCCTTTCTTCCCTCTCTTCCTATCCAGCCTGGAGGCAAGGCCAGGGTGATCTGTGCCTAAGGGAGCAGAGTTGTCAGCTACTGGGCCTCCACTTAGCCTTGTGTGTCCAGGCACTCCAAGGGTGGTGCAGCTCAGGAGTCCTCACAGGCAGCCTTCCTGCATGGAGGCTCTGCCTCTGTGTGGACTTCAGTTTCCATCTTGTCTCTCGTCTTCAGGTGACTCTGTCCTAGGCCCTTTCATGGCCTTCCTGGGACCCTTGAGACCTGCCCAAGCTAAGGAGCCAGGCTACACAGCCTACTCCAGATATACATTCCACATCTCAGCAGGCGCTTTCGGGGTTCCAGAGTGGCTGAGTACAGGCCCAGACAGGGACTCCTGAGAAGTGGAACAGCCAGTAGCTCCTCAGTGTGTCTCAGTCTAAGAGGCCTTCTGGGGAGTCTCCTGAGTTGCAAAGTGATGGCCCTGAGCGGAGGGATGTGAGGGGTGGCTGGAGATGGATGGGAAGGCCCCAAGCTCGCCCACAGAGCAGGGCCTAAGGGATGAGCATCAGTACTTGGGGCAGGAGAGTGTGAGAGGGGGCACATGCTCACCTGTGGGGCATGGCGTCGTGTGGAGGGCATGCTGGGTACACTGCAGACCCAGTATGGAAAGGACGGCAGAGAGCTAGCATCTGCCCAGAGTTCTGACAGGTTTGGGCAGTGGGGTACCACCTACTCTACCTGGGTTTAGCATCCTGATTAAAGCTAGACTGCAAACTGGGTAAGGAGTTGGTGTGGACCAGCAGGGACCCACTGCATAGCCTGGAAACTCAGACTTCCTGGAGGCACTGGGCTTTCCTGAAATAGTAGACTGTGTAGCTCAATGGCCAGATAAAAGACTGGTGGCCAGTGGGTGGAGGGTGGGGCCTGCCAGAGATCCAGAGAAAGAGTCTGTATTTAGGCGTAAGAGTCTCTGTGCTGGGCACTGAGGTCCTGAGGCTCTAAGAAGTGGCACCTCACAGGCTTACATTGCCACGGGCTCAGGTGGCCCGTGCCGCATACGCCTTGGTTATTCTTAGTGCCTGGAGCCCACCCTTCCTGCCAGGGCGGCTGCCTCCAGTCCCAATCCAGCCCACTTATTCCTATCACAGGGAGCTAGGAAAGGAACACACAGTCTCTTATCCCTAGGCTCAGAGGAAGGTTGTGGTAGAGCCAAGAGGCCACCCTGCCAATGTCAAGGGCTACACAGGCCAGAATGAGAGACCGTCTGGGGTGGCCTCAGGAGCAAAGCTGAGAGAAGAAACTGTTCTCTAGGGGCCTAGCTTCAGCTTTGGAAGGAAGCCCAGGGGCCCAGGGGTTGGGTGGGAAAGGGCTTTCAAATAAGCTGTCCACCCCCACAGCCTTTAGCATGCCCACCCACAGGCCTCAAGGGGTGTGCTCTGTTGAGCTGGGGGAAGCCAGCTCAGTGTTTATGGAGTGAGGGTGTGAGGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGCGCGCGCGCGCGCGCGCTGGAGCACTCGTGAGTTGCAGCAGCGAGGGCGTGTACCAGGAGAGCCCAGCCTTCTCCCTGGCTCCTATTTAAGCATCAGGCAAAGACCGTGGGTCCCAGCAACAGCAGTGAGGAGGCACTTGGCACTTCGGGCAGGTGGTAGCCGCTGTGCCTGGCACCTTGGCATCCTGCCTGGGCTGCACGTGGCCTGGCACCCATACAGCTCCTGATTGCTGCGGCTGGAAGGAGCCTGTGATTCTGCGTGAGTGTGGGGTCCTTGGGTATACAGTCAGCCGAGGTAGAGGTGGGCTGGCCTAGGACTGTACACTTCTCTAGGAGCTGGGCTTAACTAAAACAGAAGAGATTGCGGTTAGACATCAAGAGGAACTCAGACCCGTGGGAAAGAACCAGGACCTGAGGCAAAGGCGAGATTTGGGTGGTGGACGGGGGACAGGGAGACTCTTCACAGTCCTCACAGGACCTACACAGGGGCCTATGGTCTCAGACCTGGGATCATGTTCCTGAGGGGGTATAAGAGAGAGGGGCAGGTCAGGAAGCATAGGAAGTCCCAAGTCTCCAGCCGTATTTGATTCCACTATATCTTGACGTCTCAGGAGTGAGGGCAAGAGGGGTCTCAGAGCAAATCCAGATCCTTTGAGAGCTTCTGTCAAGCTGGGAAGTCTGGAGCAGTGTGGGGGGTGAGGAGGTGGGGTGCGTTGCGAAGCAGACCCTTCCCGTGGTGCACTTGGACCCTGCGGGCAGGCAGCTTCATTTGAGCAGGTGTCTGCACAGAGATACCTGTGCAGCCCCTGCTGAGCCTGCAGGCTCCACTCAGCCCAAGTCTTCGTTGTCCTCTGGCCGCCAGGGCTGTCAGTGTTCTTTCCTCTCTTGCTCTGCTTTTGCTCCTGGCTCTGACAGTGTTGAGTGCCACAAAAGGACAAAAGTCCTGAAGGTCAACCTGGGGACCCGATCCAGTAGGGTCTCTTCTCTGCCCTGCGACTGCCCTGTTCCCATTGCTTCAGAATCCTGAACTCAGTCCACCAGGTCTGCTTGTATCTGTATCCCAGCTCTGTTCTTACCTTTGTGTAACCTTACGTAGGCCGTAAAACCTCGCTGTGCCTTGCACAGGGCAGTCGCAGGCATGGGATGTGCCCTGTCAGAAGGTCACTCCCAGTTATTACTTCATTGCTCTTTGTGTGGACTATGGTGGGCTGGGGGCAGGTTCCAGCTTCTCACAGCAAGTGGTTCTGGAGCCCATCTCATCCATTGCTACTCCTGGACCCCAGACCAAGCTTCTGAGACCCAGCCTGTAGGGTAAGCAAAGCCAAGGCCCTTTTCCTCCTAGGAAGTGTCACTGAGTCTGAGAAGGCACAGCTTGCTCTAGTCACCTGATGCTTGGGGTTCATAGGACCAAACTCTCCTTTCGGAAGTTTGCAAGCCTCCCGAACCTGGACTTGGGCTTAGGACAGTCATCCCTGACCTAGACAGATCCTGCCATTCATTCAGCTCAGGAATCCAGAACCCAGAAAGTCCTTCCTCTTGAGGAAGAACTCTCAGCTGTAGGCATCTGTATACCTGCCCTCAGCTCCTATGGAGGTCTAGCTGTTGCCATTCCTGGGCAAGGCTTCAGTCACCTGGGCCCTCCCCTAGCCAGCTAACAGGGGATTTAGGGATGTTGGTATCTTTCCTCATGCACTGGTCCCCAAACAGCTGTCTTCTGAGCTTGACACTGGTCTAGGACCCATTGTGTGGCCTCTACCTCCCCCTTGGGTCTCTATGCCCTTGGAGATATGACCGATGATTCTCCCATCACTGCCTCCCGACTGACGACTGAGGTCATGCACCTAGTGACTATCCCAGCTCTGTGCTCGCAGAGGCCTGCTCACCGGACAGTGGAGGGTAACAGGATCAGGGCCAGGCACAGAGTGGAGCATGACTGACAGGACCCTCTGGGATGGAGTACAAGAGGCTTCCTGAAGATGGTGGCTTCTGACCTGGGTCAGGACAATAGTCCAGGCTTGAAGCTGGGGAGGGGAGAGGTGGCTCAGGCCAAGGTAGCAGCAGGGCAGGGAAGTGACTGAGTCTGGCTGCAGGGTAGCCGCCACAGGAGTGGAGACAGGAGACGGGGCAGGCGTGGAGGTGGTGTGTTAGTTAGGTCTTAGAAATGTATGTGGTCAGGGTGGGCAGTCCTAGGAGGCTCGTACTAGTCCTAGTACTAGGAGGCTGAGGCACAGAGGGCTGAATCGGTGTTTCCCTCCCCACCCAG
Seq C2 exon
GGTATCCCCAGGGCCCCGTCCTCTGACGAGGAGTGTTTCTTCGATCTGCTGAGTAAGTTCCAGAGCAGTCGTATGGATGACCAACGCTGTCCCCTGGAGGAAGGCCAGGCTGGGGCTGCTGAGGCTACAGCTGCCCCAACCCTGGAGGAGAGAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018666:ENSRNOT00000067840:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.807
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0218812=GoLoco=WD(100=43.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]