HsaINT0071926 @ hg19
Intron Retention
Gene
ENSG00000160360 | GPSM1
Description
G-protein signaling modulator 1 [Source:HGNC Symbol;Acc:17858]
Coordinates
chr9:139244039-139250298:+
Coord C1 exon
chr9:139244039-139244215
Coord A exon
chr9:139244216-139250141
Coord C2 exon
chr9:139250142-139250298
Length
5926 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGC
5' ss Score
8.81
3' ss Seq
TGACCCCACTCCCTCCCCAGAGC
3' ss Score
10.38
Exon sequences
Seq C1 exon
GAGCAGAATGGAGACAGCCACCATTCAGGGGACTGGCGGGGGCCCAGCAGGGACTCGCTACCCCTCCCCGTGAGGAGCAGGAAGTACCAGGAAGGCCCGGACGCTGAGAGGAGGCCCCGGGAGGGCAGCCACTCCCCGCTGGACAGCGCCGACGTCCGGGTGCACGTGCCACGCACG
Seq A exon
GTAGGCGTCTTTGACGGCAGATCCAGGCCGAGAGGGAGGAGAGCTTGGCAACTGCGCCCCAACTCCACTGCCAGCCAACGGGGCCAGGTCAGGCCCGGGCACTCCGGGGAGGCAGGGGTCCCTCCCCGGTGCACCTGGTGCAGTGCTGTCCTGGGACCCCTGTGGGGGCTCTGGGCAGGGCTCAGTGTTTAGCATTGTGGTCGCACCTGGCCTCAGAGGCCCCGGCCACCGAGGAGCCTCCTGGGGACTCTAGGCTGGGCTCTTCTGCATGGAACGCCCCGCCTCTCTTTGGGCCTCAGTTTCCATCTTGTTCACCAGTTGGGGGCTGGCTCTTCCCAGCCTTCAGGTGGCCTCTCTCTCTGACTCCAGCCCCCACCCTCCTTTGTTGGGACCCTCCAGACCCATCCGCTAGTCACAGGAGCGTGTCCCTGAAAGGAACTGGCTGCCTTCACTGTGAGAGCCGGGCTGCACAGATCCCCTGATGGGGTGCCCCTTCCTGAGGTGGCTCTTGGAGGCTCTGGCCAGTGAGGTCAAGCCTGTGTATCCTACCAGGGCCCTGGAGGGGTGGACGAGGCCAACACAGTCCCTGGGGGAATCCTGGGATCTCTGACACCTGGCGGGGGTCCCTGAGCAGAGGGGCCTGAGGGGCACCCAAGGGGTGGGTGGGAAGCCCCTAAGCCACACCCATGGTCAGGCCCTGGTGTGGAAGCACCTGCAGCTCCAGCTGGGCCAAGGTACTGGGGCCTCTCCTTGTGGGTGCAGGGGCCGGGGCAGGACCGATGGTGAGTGGGGTCATGGAGGGGATGCAGCTGGGTGGCCTGTGCATGGCTGCAGAGCCCCTGGTGAGGGGACAGCAAGGGGCTAGGTCCACTCAGGGTTCCTCCTGGTCAGGGGCTGGGAGGCCCCACCCTGCCCTACCCCACCTGGGCTCAAGGTCACGAGTGGAGCAGAGGGTCACAGCCCAGCAAGCAGCAGCAGCGCAGCCTGGGCGCCACCCGGGTCCTCAGGGCTAGCCAGGAGCCCCCCGCGTTGCTGTGGCACACAGAGGTGGCGGGAGGGGTGGGGCAGTTGCAATGACTGCCAAGTGTATGGGTGGACGGACGGGGGACAGACAGACTGGTGGTCAGACTCGGGGTTGGTGGGGGGACGGGTGACAGGCCGGGCCTGTGCCTGGCAGGTGTCAGCTGTGCCAGGGCCACCCCAGCCACGGGAGAGCTGGTTGGTGTTCAGGGGCACCGATGGGCTGAGTCCGGGTTCGGAGGTCAGCCTGGAGCTCCCCCGAGCAGGACGGCTGGGTCCAAACCACTAGAAATAGTCTGAAATTGTTCTTCCGTGGGCACCAACCTGCAGAGGGGTGTGGGTGCTGGGCTGGGATTCGCAGCCCCCCGAGGCTGCCCAAGCCCATCCTTCCCACCAGCAGGGCACAGCCTACCTTCCCCTCATTCAGCCCCAGCACTGCCCAACCATCTGGGCTAGGTCCATCCGTCCACTGATGGGAGAGGTGTGGAGGGAAGGGCACCCAGGGAGCACCTGGTCAGGCCTTCCCGGGGGTCCCGGTGATCCCCCAGCCTCCCTGGGCCTGGAGGGAGGAGCAGGACTGGGACCCAGACACCTGCCCTGTCCACAGCTGGCCCTGCCCTGTCCACAGCTGGGTCTGCCCTGTCCACAGCTGGCTCTGCCCATCACATCTGGGCCGCCAAGGAAGGAGTGGGAGGCTGGCAGCATGTGTGGGACAGACCAGTCAGCCGGCCTCAGGGGCTGATGGCTTTCTAGAAAGCACAGCCTCTGAGGGCTTCCAGGCTTCACGTCACCCCAACAAACTGCCCTGGGTCTGGGCCAGCAGGGCAAGGGGACACAGTTCCAAGTGTCCAGCTGCCTGGCCCAGCACTCTGGAGGCCTTGGCCAGGGCCCCAGGGAGCCCCCACCTGCTGCGGGCCCTGCTCCCCTGGCCCCTGCAACCACCGCGGGGCAGGACGCCTGGGACAGCCAAGATCCTGGCCCCAGACAAACGGGGTTCCCAGGGTCTGTGAGGACGTGGCAGGGCCTCTTGGCTTTCTGCTGACCTGAACCCCACTGGCCTTACCGAGGTCAGAACCTTGGGTACCTCCGAGTAAGGACCGTCTGCACCCTGGTGGCAGCCTGTATGGGGACTGCAGCGAGGGTGGGTGGGGGATACATCCCTGGGGCGTCAGTGGCCGGGTGGGCCCCCTTCCCCCTCTGCTGGGGTCCTCAGGGAAGGGCTTTCAGCTCTCAGTTGGGGTCCTCATCTGCAAAGTGCAGCTGATACCAATACTGCGCCGTTGCTGTTGGTGACACCAATACTGCGCCGTTGCTGTTGGTGACACCAATGCTGCGCCGTTGCTGTTGGTGACACCAATGCTGCGCCGTTGCTGTTGGTGACACCAATGCTGCGCCGTTGCTGTTGGTGACACCGATGCTGCGCCGTTGCTGTTGGTGACACCGATGCTGCGCCGTTGCTGTTGGTGACACCGATGCTGCGCCGTTGCTGTTGGTGACACCGATGCTGCGCCGTTGCTGTTGGTGACACCGATGCTGCGCCGTTGCTGTTGGTGACCAACCAGCCCCTGCCCCTCCCCACCCTGTGCCCAGACAGTGCAGGGGCCTTGCAGCCAGCACATTCGGGGCTTTGGGATCTGAGGCGGTGTGGCTGGGTGTGGTCTGGGGGTCCAGAGAACTCATTCTGGGGTGGAGGGTAGGGGACAGGGCAGGGTTGGCCTCAGAGGCTGGAGACAGTGTAGGTCCAACCAGGAATGAGACAGAGAGGCAGCAACCAGAGGCTTGAGTTGAGCTGGCCGGGAGGCCCTTGAGCCAGGGCACTGGGGAGCCACCGAGGGCTGTGGGACAGGAAGGGCCGTCCCGGACAGAGGAGTCCAGATGAGGACAGCAACCCGCCCAGGTCCTCTGCGCCTGCCTCCGTAGTCAGGCTGAATAAAGAGGTGGCTTTCCCCACCTGGCCCAGCTCTGGAGGGAGGCCCAGGGGCCCAGGTGTCAGCGGGAAAAGGGCTCTTCGGCAGGCTGTCTGCCCACACAGCCCTCCAGTGTGCCCGCCCACAGGCACGGGGAGGGGGAGGTTCACTGCTGCACTTGCTGGGGGAGTGTTTACGGAGTGCGCCTGTGTGTGAGTGCGAGCCCACGTGCGTGTGTGTGAGCCTGTGTGTGTGCACGCACTCAAGTGAGCAGGGGCGGGCGCTAGGAGGGCCGAGCCCTTGCCCAGGGTCCTATTTAAGCCTCAGGCATCCCAGCATTGAGGCAGCACTTGGCACTTTGGGCAGGGCGGTGGTGGCCCTGGGCACCTTGTGTCCTGCCTGCGCTCTGTGTGGCCAAGCACCCAGCGTGGCTCCCTGCTGCTGTGGAGACAGCCTGTGATCCGCGTGAGTCTGGGGTCCCTGGGGTCCTAACAGGTGGAGGCTGAGGGAGCACACGGGCCTCTGTGAAGCCGGGTGGGGTGGTCTTGGGCCGGGTGCATTCCCCTCCTCCGCAGGAGAAACTGGGCTTGTGCCAAAGCAAGAGAGACTAGAGTCAGACTGCAGGAGGGACTCTGAGGCCTCCGGGAAGGAGGGAGCCAGGGCTTGGGGCAAGGGAGAGGTTAGAGCAGGGAGGCGGAACCCCGAGTCCCACTGGATATGTTCTACTGGGACATAAATGCAGGGGAAGGTGGCCTTGGGGCCCAGGGTCCTGCTTCTGAGGGGCTCCAGGAGCCCCAAACTATCCAGAGCCTTTCCCCGTACCAGGCACTGAGCCACGGTTTTGCACCTGCAGTCGTGGGCCCCTGCCCCCATGTGAGGGAGGCATCAGCCCCTCAACAGCTGGCCCCAGCCTCAGGGAAGGGGAGGGCTGCCCGACATAGGACCCTGAGAGGGGCTCTGCCATGGGGCCTGGGACATGGCCCCTGACGGGTCCTGCCTTTCCCAGGAGGGACCTTGCTCAGTCCACCTGGGCCCCGGGTCACCTGGGGGAGTCCAGATTGGGCCAGAGGCAGAGGCCCCCCGCGGCTGTGCCCTAGGTCATCATAGCCCAGGAGCCAGTTCCTTTTAGACCAGGAGGCCACATCCTCCTGGGGAGGTACCTGTGTGGCCCCAACTGGCACTCAGGCTGGCAACCCCAGTGCCACCCTCTGCCTGGACCTGCAGCTCCCAGAGCCCTGGCCCAAGTGGATGTGGCCCTCCCCACAGACTGGGCCAATTCTCCCCTCCCTCCTGGCTGGGGAATCCGGGGGAGTGGGGGTGTTGCCTTAGGCCTGAGCCAGGCTGCAGGAGGAGAGCCCTGCGGGGAGAAGGGGGTGCTAGAACTCTCCCTCCTCAGGTCTGCCTCAGGGACAGGAGGTACCTCAGGCTTCCGTGACAGCTGGGGACTGACTCCAGGGGCCAGAGCCAGGTGGGGTCTCTCCTAAAACAGGGCTGTCCACAGGGCCCTCGGCTCAGCTCAAGGGTCTGAATCCCAGCTCTTTTTTGCTCCAGCATGACCTTGGGTAGGTCACACATGTCTCTAGGCCCCACTCTCCTGTGCCCTGGGCCGAGTCCAGCAGAAAACTGGAAGCAGGACGGGAGCCCTAGTCCTGGGCTGTGGGGGTCAGGTGTCGGGAATTCCAGTTGTCTGTCAGACAGCTGTCCGTCTCCTGGGCTGTGGGGGTCAGGTATTGGGAATTCCAGGCAGCATCGGGGACCCGGGAGGTGCCATCTCCACCAACATTGCGTCTCTTGTTAACTCGTTCAGCTGTGAGCCCAGCATTTGCAGACCTGGAAGAGGCCACCAGCCGTGAGATGGACAGGCTGGGGCCGGGCAGGGGCTGCCAGCGCCGGTCGGGAGGTGGACGGGGCTTGGAACCATCACAAACACCCTTCAGCCCTGGGGCCCGGACCAGGCCCTGTGAGGCTGGGTCACGGGGTGGACCTGCTTCAGCTGGGCCCCTTGGGGGGCCACAGGAGACCACGCCCTCCAGCCTCCCTTGTTTGGGTGTGTGGACTGAGGCCCAGGGCGGGGTTCATTCCTTCGAGTTCATTCACACAGCAGACACCGGTGAGGGCTGTGTAGGGCATGGACACAGGGAGCTCATGGCAGGGCTGACACAGGGTGTGGTGGGCACAGGGACAGGAGGCACGGGAGGCTTCCCGGGATGTCTGGGAAGTGTTCCAGGCCAAGGCTGGGGAGGCTGGCCCAGGGCAGGTGACGGACAGAGGCCTGGACTGGGGTAGCACCCATGAGAGGGGAGAAGTCCGGGGCAGTCGGCGGGTGCCGAGGGTGAGTGACACGTCCTGGGGGAGGGGTAGCCGGGTGCCGAGGGTGGATGACACATCCTGGGAGAGGGGTAGCCGGGTGCCGAGGGTGGTGACACGTCCTGGGGTAGGGGTAGCCGGGTGCTGAGGGTGGGTGACACGTCCTGGGGGAGGGGTAGCCGGGTGCCGAGGGTGGGTGACACGTCCTGGGGGAGGGGTAGCCGGGTGCCGAGGGTGGGTGACACGTCCTGGGGGAGGGGTAGCCGGGTGCCGAGGGTGGGTGACACGTCCTGGGGGAGGGGTAGCCGGGTGCCGAGGGTGGGTGACACGTCCTGGGGGAGGGGTAGCCGGGTGCCGAGGGTGGGTGACACGTCCTGGGGGAGGGGTAGCCGGGTGCCGAGGGTGGGTGACACGTCCTGGGGGAGGGGTAGCCGGGTGCCGAGGGTGGGTGACACGTCCTGGGGGAGGGGTAGCCGGGTGCCGAGGGTGGGTGACACGTCCTGGGGGAGGGGTAGCCGGGTGCCGAGGGTGGGTGACACGTTCTGGGGGAGGGGTAGCCGACAGGGGGCAGGTTAGAGTCCCGATCTTGGCCAGGGTCTCAGAAGTGTGTGTGGCCTGGGCAAGCAGCCCCCGGTCTCGTCTGGGGGTCTGCGGGGCTAGCTTTGGCTGCGGTGACCCCACTCCCTCCCCAG
Seq C2 exon
AGCATCCCGAGGGCCCCGTCTTCGGACGAGGAGTGCTTCTTTGACCTGTTGACCAAGTTCCAGAGCAGCCGCATGGACGACCAGCGTTGTCCCCTGGACGATGGCCAGGCCGGGGCTGCCGAGGCCACGGCCGCCCCCACCCTGGAGGACAGGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160360-GPSM1:NM_001145638:11
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.815
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0218812=GoLoco=WD(100=43.4)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)