MmuEX6099692 @ mm10
Exon Skipping
Gene
ENSMUSG00000026930 | Gpsm1
Description
G-protein signalling modulator 1 (AGS3-like, C. elegans) [Source:MGI Symbol;Acc:MGI:1915089]
Coordinates
chr2:26325337-26327415:+
Coord C1 exon
chr2:26325337-26325492
Coord A exon
chr2:26326214-26326322
Coord C2 exon
chr2:26327292-26327415
Length
109 bp
Sequences
Splice sites
3' ss Seq
GATTGTCTAACTTTCCACAGGGT
3' ss Score
9.1
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GAAGACGCTGCAGCTGTCTCGGCAGCTCCGGGACCAGGCAGTGGAGGCTCAGGCTTGCTACAGCCTGGGCAACACCTACACACTGCTACAGGACTACGAGCGTGCTGCTGAGTACCACCTGCGGCACCTAGTCATTGCCCAGGAGCTGGCTGATAG
Seq A exon
GGTGGGAGAGGGCCGAGCATGCTGGAGCCTGGGGAACGCCTATGTGTCCATGGGGAGCCCTGCACAGGCCTTGACCTTTGCCAAGAAACATCTGCAGATCTCCCAGGAG
Seq C2 exon
ATTGGAGACCGAAACGGAGAACTGACAGCCCGCATGAATATTGCCCACCTGCAGCTGGCCCTGGGCCGGCTGACTAGCCCAGCAGCAGCGGAGAAGCCAGATCTGGCTGGCTATGAGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026930-'15-20,'15-17,19-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.381
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(61.5=90.6)
A:
PF134241=TPR_12=PD(3.1=5.4),PF134241=TPR_12=PU(49.2=83.8)
C2:
PF134241=TPR_12=PD(46.9=71.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACGCTGCAGCTGTCTC
R:
ATCTGGCTTCTCCGCTGCT
Band lengths:
258-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types