HsaEX6063986 @ hg38
Exon Skipping
Gene
ENSG00000160360 | GPSM1
Description
G-protein signaling modulator 1 [Source:HGNC Symbol;Acc:HGNC:17858]
Coordinates
chr9:136338555-136341836:+
Coord C1 exon
chr9:136338555-136338710
Coord A exon
chr9:136339707-136339815
Coord C2 exon
chr9:136340870-136341836
Length
109 bp
Sequences
Splice sites
3' ss Seq
CTGGTCTCCCTCTCTGGCAGAGT
3' ss Score
8.6
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GAAGACGCTGCAACTGTCTCGGCAGCTCAGGGACCAGGCAGTGGAGGCGCAGGCCTGCTACAGTCTGGGCAACACCTACACGCTGCTGCAGGACTACGAGCGCGCGGCCGAGTACCACCTGCGGCACCTGCTCATTGCCCAGGAGCTGGCCGACAG
Seq A exon
AGTGGGCGAGGGCCGGGCGTGCTGGAGCCTGGGAAATGCCTACGTGTCCATGGGGCGCCCAGCGCAGGCCCTGACCTTCGCCAAGAAGCACCTGCAGATCTCCCAGGAG
Seq C2 exon
ATCGGGGACCGCCATGGGGAGCTCACGGCCCGCATGAACGTGGCGCAGCTGCAGCTGGTGCTCGGCCGCCTGACCAGCCCGGCAGCCTCAGAGAAGCCTGACCTGGCCGGCTATGAGGCCCAGGGTGAGTTCCAGGGTTGTGGGGGGGTCTTGCTCCCCACAGGCACGGACCGCATCAGGAGCTGCGGAGGGGTGGGATCGAGGCCAGGCCAGCATGGCGGAGGTGGCAGCCGCCAGAAAATGGCGCCTACAAGCCAGTTCTTCTTGGCCTCAGGGACAGCACAGGCCTGAGGTTCACCCTGAGCCCTTCCCACCCGCATCCTGAGTGGCGCTGCAGGGCTGCTGGATGAAGGACAGGAGGTGGTCGCCTGTTGCCCCACTGGCTGCTCCAGGGCCTCCACCCCCACCTCCCCCTGGAGCCCTCGGTGCAGGGAGGGCTTCTGTCCTCAGACCCAAGTAGGAGAGGGCTGCTGGGAGGCGAGAGGGCATCAGCCAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160360-'14-20,'14-17,15-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.362
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(60.8=90.6)
A:
PF134241=TPR_12=PU(52.4=89.2)
C2:
PF134241=TPR_12=PD(44.4=66.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTACAGTCTGGGCAACAC
R:
ACAACCCTGGAACTCACCCTG
Band lengths:
243-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains