RnoINT0067127 @ rn6
Intron Retention
Gene
ENSRNOG00000018666 | Gpsm1
Description
G-protein signaling modulator 1 [Source:RGD Symbol;Acc:628682]
Coordinates
chr3:3779610-3786023:+
Coord C1 exon
chr3:3779610-3779733
Coord A exon
chr3:3779734-3785952
Coord C2 exon
chr3:3785953-3786023
Length
6219 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TGGGCTGTGATCTCTTCCAGGAG
3' ss Score
8.89
Exon sequences
Seq C1 exon
ATTGGAGACCGAAATGGAGAGCTCACGGCCCGCATGAATATTGCTCACCTGCAGCTGGCACTGGGCCGGCTGACTAGCCCTGCGGCGGCAGAGAAGCCAGATCTGGCTGGCTATGAGGCACAAG
Seq A exon
GTGAGTTGTGGTTCTGGGGGCTGGGCTGGGCTTCCTCGTGTTTCTAGCCTCAGCATGAGGTACAGTCAGGTCTGAGCAGAGATATGGCAAGAGAGAAACTCAGGGGGAAGACAGAGGGTTATATCAACAGGACTGGCCCTTGGTTCAGGGCACAGGGTGAGTCTCCCAGAAAGGGAGCCACTAACAGCCACTCAGTAAGAGAAGAGGCTATACCCAATCTGAGCACCGGCTCTTCCCACCCTTGCTCCAAGCTGGGGAGAGACCGCAGTGGGAGTAGAGACAGGTGGACCCAGAATTGCATTGCAGTGTGATGTGGGAGAGACAAGGTGTCCAGAGTGTTGGGCCACAGATGGACCCCACTGGGGTATATCAGGGACCAGGGATATTTTAGTTACTGTTCTATCGCTGTGAAGAGACACCATGACCAAGGCAACTCTTAGGGAAAAAAAGCATTTAATTGGGAGCTTATGTAATAGTTTCAGTGGTTTGGTCCATTATCATAATGGCGGGGAGTATGGTGACAGGCAGGAAGGCATGGTACTGGGGAAGCACCTAAGAGTGTACATCTGACCCAAAAGTTACAGGAAGAGAGAAAAAAAATGGGCTTGCATGGGCTTTGGAAACCTGAAGCTCACTCTCAGTGCCACACCTCCTCCAACAAGGCCACACCCCCTTCAACAAGGCCACACCCCTCCAAGGCCACACCTCCTCCAACAAGGCCACCCTTCTTAATCTTTCCTAGACAATTCCACTATCAGGGATACAAATGTGTCCATGAGGGCCATTCTTGTTCAAACCACCACAAAGGACAGCTGAAAGGTGGGGCCAGAATGATAGGTCATAGGGTAGTAACACCAGTGGCAGAGGGCTGGTGGTCAGTTATTCATACCCTTGAGAGAAAGAGACGCTGGTCTCCTAGAGCCCCTCCCTCCCATGATCCTAATTTACCACAGGACTGCTGGTAAGAAGACAGAAAATGACACCTTCCTAAGCAGCCCGGCAGGCAGCGCCCATCATCATACTCTGGGGAAGGGGCTGTCGTCTGGGAAGCTGGAGGGCGTCTGAGAGGCTGGAGGGAGCCGGTCAGTACCTGCCTGGAGTACTAATCAGGCTGAGGCACTTCAGTGACCTCATTCAGACTGCTGACTGTCCCCATGCGGGTCAGACCCATAGTGAATGAATAAGAGGACAGAATGTTCCCCACAGAGCAAATACATTAGTACGTACATAGGAGGGGCTGAGTGGATGCAGGGTGTCATGCTGACTTGGCTTCTTGAGGCCCATAAGGCTCTAAGAGGAAGCGAGCGTCATCAGGGAGCCCAGCCAGCTGCCCCCTGCTTATCATTGAGTTTGCCAAGAATGGAGCCCCAGCTCCTCGTGAGTTTTTCCAGGAGCGCCCACCGACTCCAGCCTCTTAGGCCATTCAGAAGGGACACTTCCTACCATGAGAACCCCTGGTTCCTCAAGCCTGGAATTTCTCAGTATGACCTGGCCTGGATAATAAGGCTGGGGACAGAGGGGAGGAGCAAAGGCTTCTGGGACCCTTAGCCACTCGGTGCGGCAAGAGATACAGTGGCTAATGTGTGGGATGGGGTTGCACAGGCTGTGGTTTCCCAGGGTAGATAGATCTGTACAAAGCCTCTAGCACAGCCCTCAGCCCCCGTAGCCTGAGCAGAGCTGGCCAGCTTCTGGAAAGATTCCCACAGAGGCGGCCAGCTCCTCATCCTAACTGAACCTCCAAGCTAAGCGAAAAGGGGGGGTAAGTCACAAGTAAATGGTGAGGGACAAGGCAGCTCTGTCCTCCCCACGTTGGCTCCTCTGCTCTGCCTTGCATGCCAGACCCTTCCCAGCTGGGGCCCCCGGAAGCCACCTCCCCGCAGGGCTTCTTGTGTCCAACGGCTGGGTCCTGGATGCTGGGAAATAGTCTGTCCAAGGAGGACATCGGGGAGAGGGCTCTGCTACCCTGAATTTCTGGGATGCAGTTGCTGAAGGCAGGCCGGCACTGTGAGAGTCTGAGTGGTCCTGAGGGAGCCCCCTACTCAGGTGAGCCAGGAGTGTACAGGATCGGGAAGCAGGGAGAGAACTGGGCTTGGCTGAGGCAGTTGAGATGGGCTGGGCCCGCCTCCTGTGGACTGTCCGGAGCTAGGCTAGGCAGGTGCACATCCAGAGTCAGTGAGAGTGGTTCTGGTACAGGGGGCTAGGCGGGCACCCCAAAGAGCACACACCCAGAAGGGTTGGGGATGGATGGCCTCCTGGGGTTAGGGAATTCGTTCTGCCTGGGCCAGAGGGAAGTCAGAGCCAGAGAGCATGGCATTCCGTTGTTGGGCTCAGTCTGGTACGATATTTACATGAGGCTGTGGCCTGTGGGACTTCAGGACAAGGTACTCATTGATGGCTTGAAAGAGTGGGAGTGGTTTGAGTGGGCAGCAGGCAGAACCATGTATGTGGGCGTTGGGCAGGGAGTGCTGTGTGTTTTGTAGAGTGGTACTTGGAGCATGGTGGGCATTGTAGGTGTGATGGTGACTTGAGGCAGGGCAAAGGCACAGTCTTGTTTTTTATTTCGTTTGTATGTTTTTCTGATTTGATCGGTGTAAACAAGGGACTCTTGTGCAGGAGGATAGATCCTGACAGCCGGAGGCCTTACCTCCCCTTGGTGGTGCATTCTCAGTCAATAAAGCAGCAGCAGACTGTGTTCTAGTCAGTGGGGATTCTACCCTGCCCTCTGCTTCCCCTGCTCAGTCTCTCTGGTCGTGTGGCTGTCTGAGACCCTGATATACGGCACACTTGTGCCGTGCGTAGGCTGTAGTAGTACAAGGAGCATGCAGGCAGTTTCTGTTTGCCCTTTGAGGAACATGCAAGGGAGAAGGGATGCTAGCCTTGGCTAGCCCTGGCTAGCCCTGCCAGACTTGATGGGCCTGGGTTAAACCGCCCCCTTCCCAGTGACAAAATATAAGCCCTCTGCTCTGATGGTCTGCAGTCCTTCTCATCCTTTGGGCTCAGTATTGCAGTATCAGCCTAGGGCAGCTCCCTGAGGTCCTGTGTCCTACAGGCCTTTCTTCACCTCTGGGTCAGGGATATGCTTGGCATGGTGTCTGAGGGGAGGTGTAGGCTGTGGGCTCTACAGCCCTGGCCCTGTCTGCTGCAGTCCCCATACCTCAGTGCCCTATCCAGGAGGAGGGTTCACTAATAGTGCTGAGGGTGACAGGGGCAACCGGCCTGAGTGCTGAGCCTCCTATGCAGAAGTGTCTGCCGCTGTTGGGGGCCCTGTGGAGGGCCTTATGGGCCTGCAGACCCAGTAGAGGGGAGATCTGTAGGTCTATCCAGGAGCTCACTGTACTTCTAGCATGGAGAAGGGACTAAAAGGACAGGCGAGGGACTGACACAGGGAGAAAGGGGCCAGTGTCTAGATCTGTATAGTTAAGACTACCAGTAAGAGCCACCATGAACTCTGGATGCATTGGAGCGAGGACTGGACGAGGAACACTCGTGGGTTTGGATGGTCCCCCTCAGACGTAAAGGACAGGGGCCTCCACGAGACAGTGACCATCCACCTTGGGCAGATAGGCATAATGGAGAAGTGTCCAGATCTTGTACTGTAGGCAGGAAGCTGAAGGAGGGGTCAAGGTCTGAGGCCTCAGTGGGTGTGGCTCAGCCGAGGAGGCATGGTCATTTGCACTGGCCTGACCTGACTTTTGACTCTAGACAGAGGATCCATTCATTTAACTGGGCTCAGCAGGCTTCCCGCCCTGTCTGTCTGTGCACAAGGAGGTGCCCTTCCCGAGCCAGCTTGTAGGCTCTGGTTCAGAAAGACTGCTTGGGCCCTCTCTGCTCTCCAGAGGACACATCTAGTAGTTCAGTGAGTACACGTCGGGGACCTGGAACATGGCTTCATGCTTTGTGTGTCTTCATTCTTTTTGCCTTAGGGTTTCTCTTCTAAGCTGGGCACTGAGTGGGCATTAAGTGGCCTGTGGCCCATGACTGCTGTAGCTGGGACTGACTGTGGCTATGGTGACCCTGTGTCAAGGGCAGGAGAGACAGCAGGCAGGGCCCTCCTGGGTGCTCAGAGCCATACCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGTGCATGTGTGTGTGGTGTGAGTGTGTATGGTGTGTGTGTGTTGATATGTGTGTGTGTGTTGGGATGTGTGTGTGTGTGTGGTGTGAGTGTGTATGGTGTGTGTGTGTGTTGGGATGTGTGTGTGTGGTGTGAGTGTGTATGGTGTGTGTGTGTGGTGTGAGTGTGTATGGTGTGTATGTGTGTGGTGTGAGTATGTATGGTGTGTGTGTGTGGTGTGTGTATGGTGTGTGTGTGTGGTGTGAGTGTGTATGGTGTGTGTGTGTGGTGTGAGTGTGTATGGTGTGTGGTGTGGTGTGAGTGTGTATGGTATGTGTGTGGTGTGTGTGGTGTGAGTGTGTATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGGACTGGTTTGTGGCCTCCCTGTTGGGTCCCTCCGTAGTCCCTGGGTGCAGTCCTCATATCCCTCCAGATTGCTTTTCCCCCTGGGATGTTTTATTTCTGAACCACTTAGGACACAAGTCTGTCTCCCTCAAATGTGCCAGCTTGGACAGGGGAGAGTCAGTCATGCCCTTCTGATGGCTTTTCCTGTCTCGCTGGGTCTTCTATCTTCTGTATTCTCTCACTTAGGTCTACAGCCATCCTGTTAAAGGCCTGTGGGACCTGCTGGAGCCCTGGGCTTGCCTGCCACTCATACATTCCTGTCCATTTTATTTTATTTTATTTTAGAGAATGTGGCTTCAGACTCCCTCTGTAGCCAAGGCTGATCTTGAATCTGCTGCTCTCGTGAGTGCAGTGCTAGCCAGATTGTCCTGTAAGGCAACAATGGATAGGTCACGGGTATTGGCCAGTTTGCCATGAGCATGGTGGGCATTGTAGGTATGATGGTGGCCAGTACCTGTCCACTGCTGGTGTTCACTCAATAGTCCTAGAGGGCGAGCCCTGCAGGACAGTGTTTGCCAGTGCCAGGCTCTCCCCTCAGTGTACTTTTTTGCCTCACAAGCCCTGCCTCGGATATGTATACACTGTATGATGTGGTCCCGAACCGTAGGCACCCAGTACCTGTGGGGGACTGGTGACCCAATGAGAGGTGGGAATGGTGGCAGCCAGCAGTCCCTTGGAGAACTGGTGCACCAGGGACAGGAAGAGGCTGGGTCTTCAAATCACCAGGCACACTCCATTCCCCACTCCTGTCATACCTCCTCGGGGGCTGGGGACGACAGTCCTTTCCCAAGGGTGCCCCTGTATGGTCTCTTCACAGCTTGGTTCCATCCTGAATTGTCCATTTGTGGCTGGCTGGCCTGGCTTTGCTCTGGGTACAGACTACCTGGCTGACTCTCCCAGGACCTAGGTCCTACAGGTGGTCAGAGCAGCTACCAAAGCTGGGCTCACTTCCTAGGAGGGGACCTGGGGACCAGGGTAGAATTGCTTCCCCAGCCAGCTGACAATGAAGGCCAGGGACCCTTAGGGCTGGTGGTGGCACTGAGCAGTCTGTGTCCTGGGGGCCAACTGTGTTTGTGGAGTTGGGGGCTGACGACATATCTCCTGTGGTAGCCCAGGACTCAGTTCAAACCATCTGAGGTTGCTCAGAGTCCAGAGTTCCCTATGGCGGGACTGACCTGAGCCATGCACCATGTCACTGCTACTCCAGCCTGGGTGGTCCACAGTGAGCCTCATCGACCCAGAGGTTCCTCCCTGCCCCGTCCTCATGTGGGTTCAGGGGATAGGATGGGGGCAGATCAGGTGTGGCCTCATGGAGAGGATCCTAGGAGTATGGTGGCTGACTTCCAGGCGGAAGGACCGGTGCCAGCTAAGATGACAGGAAGTATAGGGCAGGGCTTGGCAGAGAATCAGTCCCATTAGGGTGGTGGGGGACACCACCAAAGCTAGCGCTCCTCGGGGTCAGATCTCTCCTTGTTCCTTGCCTGGCTTATCTAGTGCCCACAGTGACTCTGGACACTCAGAGAGAGGCTGCATTTTCCCCTCACAAGAGGCTATGTATGAACTCCAGCCCTGTGTCCCTACTGCTGTGTCCTTGGCCTCCCAGATCTCTTGCTTGGCTAGTGGCCTCAGAGCTCAAGGTCAGCAGTGGGCCGATGGGCTGTGATCTCTTCCAG
Seq C2 exon
GAGCAAGACCCAAAAGGACACAGAGGCTGAGTGCGGAGACCTGGGACCTGCTGCGGCTCCCCCTGGACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018666:ENSRNOT00000067840:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=NA C2=0.583
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(46.9=71.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]