GgaINT0124005 @ galGal4
Intron Retention
Gene
ENSGALG00000001797 | GPSM1
Description
G-protein signaling modulator 1 [Source:HGNC Symbol;Acc:HGNC:17858]
Coordinates
chr17:7921458-7923972:-
Coord C1 exon
chr17:7923764-7923972
Coord A exon
chr17:7923605-7923763
Coord C2 exon
chr17:7921458-7923604
Length
159 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
CCCCTGCTCTTCCCCTGTAGTCC
3' ss Score
10.28
Exon sequences
Seq C1 exon
CACACTCCTCCCTGATGGCATCCCCACAGACGGAGGAGTTCTTCGATCTCATCGCCAGCTCGCAGAGCAGACGGCTGGATGACCAGCGTGCCAATGTGGGCAACCTGCCAGGCCTGCGGATAACACACAACAACCTGGGGCACCTGTGCATGGAGGGGGACGCCCAGGAGCCTGGGGATGAGTTCTTCAACATGCTGATGAAGTGTCAG
Seq A exon
GTACAGCAGGGCTGAGCAGGAGGGAGGGATAGGCTACTTTCTCCGCCATCAGCAAGCAATGCCCCCTTGCTCTCACCAGGCTGGCTGTGGGCTGTGGGCAGCAGCTGCCCACCTGCAGGCTGTCAGCACGCAGCCCTAACCCCTGCTCTTCCCCTGTAG
Seq C2 exon
TCCTCCAGGATAGACGACCAGCGCTGTGCACCACCAGACTCCATCCCCCGTGGTCCCACCATGCCAGATGAGGATTTCTTCAGCCTCATCCAGCGGGTCCAGGCCAAACGCATGGATGAGCAGAGGGTAGACCTGGCCTCAGCACAAGAGGAGGCAGAAGAGGAGCAGCAAAGGCCTGGTTCCAGCTAAGAACCGGGGTTGATTTGGGGGGTTTGTTTTGGTTTCATTTGTTTTTTCAAAAAGAACTTAAGTGTAGGTGGTTTCAAACAGAGTGCTCCTGCACCACCAGACTTCTCCCAGGATCTGCACCTCAACTGCACTGCACCTGGTGTTCAGAGGAGGGGATGGCTTTTAAACAAGGGTTTTTTAGGAGATGCAGCCTCTGTAACAATGGGCACAGCTCAAGGGAAGAAGACCTTGGCAGTCCTTTTGCTTGTCACCTAAAACTCCAGGAACTCACACTGTCAGCTGAAGGAGGAGCCTAGAGCAGGTAGTTAAATGCAGCCTCGATCTTCTTTATTTCTAAAATACTTTTAATAGGGAAAGGGACATTTTTGCAGTCACATCTGCGTCATGAGATGACACAAATTGTTCTGGATCATTTCCTGGAACATCTTCACCAGTTTTGTTTTTTCTGCAGAAGGAAATGAGCCCAAATCAGAAGCTGCACAGGACCTTTTAAAGCTCACCCCACCCCTGGCTGCAGCTATGGTCCCCCACCCGTTGAAGTTTGTTCTGGGGTTGCTCTAAACTCTGCAGTGAGAGCTGTATGTTGTCCCCTCCACTTCCTCAGCTGCTCCTGTACAGAGTTGTGCCAGAAGCTCCAAAGCAGGAGCTGGAGCTCTCCCTCTTTAACTTTAGTGGGATATGGAGACCTGCAGAGAATGAGCATGAGACAAAACCTGAAAGGTAAGTGCCAGCTATGCTGCCTGCACTGCAGCCACAAGACAGAAGAGCTGGTACCTTGCAAAGAAGGAAGAAAGTCTTCTGCTCATCAATCAAACTTAGCTGAACTAATTGTTTCTGGTGAGGCTCCTGGTTCAGCTGCACACGGGACGGTCCAGCATGCCTAAGGCAGAAACCTGCATCTGGCACTGACCTGCTTTGTGAGCCAGCAAAGTTTTCTGGCCATGGCTTGTCATGAGAGCAAGCAGAACTATCTCCTGCACCTGGCAACGGAGGACAATAGCACTTCCCTCCCCTTCTTTCTCCTGAAAGAAATCAGTGCTGTGCTGCTCTGTGCCCCAGCAGACCTGCTCTCAGCAAGGCAGTCCTTATTCCGCACATCGTCTGGTCCCACACCAGCAAGAAATGGAGCCTTGGCAACAGCTCCAGGCTGGGATTGTTACTGGGAGGTCAGTTTCACCCTGTACACAAGTGCAAGGGTCTACATTTACTTTCATCCCTTTCGGTAAAGTTGGAAATGCACACCCAGAGAGGAGGACAGCAGAGATCAAACTTCAGGAGGCGGAATGCTTGACCAGAGAGGCTGTCCTGGACTTCAGAAACTCCAGTAATGAGTTCTGCTGAAGCAGATGTGTTTCCTACAGGGGACAAATCAGCACTTTCTAATCAAAACAAATTTGATAGAAACATTTCCAACCAGCGGTAAGATTTTTCCACACCAGTGCCGCTGCTCACCAGGCATTTAACCGGCCTGTACTGACCACGGGAGGGGTAGCTGCATTTCAGCTGCCACCAGGGAGCACTCACCTGCTGCACAGAAGGCTGAGCTGAACCTCTGCCTCCTTCCTGGGCCAGGTAGAGAGCTGGAGATCAGGCAGGAGGATGTGCACAGCCACGTATATACCCACCTAGCTTGTACCTGTAAAGAGGACAGAAATGGAGATGAGAATGACTTGACCAGCTCTAGGCTTGGCCCTGTGCAGCTCTCAGCCAGGTGGTGAACTGGAATCTGACCATTAAGCTTTCAGAGGTGTTAATTATTTGCCATATACTTGAATGTATGAGCTTATTTATTTTTTACATGTGCATTTGCTAATGTCATTTTAATGGGGAATTTCCAACCCACAGGTACTTTTTTTCTAAAAAAAAATAATCTGCCAAATGAATTAATATATTAGAAAGGAATACAGCTCAAGGGACAGGGAGAGTTGTGCTTAATAAATATTTGTGTCTAAGCTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001797:ENSGALT00000002770:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.700 A=NA C2=0.887
Domain overlap (PFAM):
C1:
PF0218812=GoLoco=WD(100=32.9),PF0218812=GoLoco=PU(47.8=15.7)
A:
NA
C2:
PF0218812=GoLoco=PD(43.5=15.9),PF0218812=GoLoco=WD(100=36.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACACACAACAACCTGGGGC
R:
CTTCTGCCTCCTCTTGTGCTG
Band lengths:
249-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]