HsaINT1014794 @ hg38
Intron Retention
Gene
ENSG00000160360 | GPSM1
Description
G-protein signaling modulator 1 [Source:HGNC Symbol;Acc:HGNC:17858]
Coordinates
chr9:136356342-136359605:+
Coord C1 exon
chr9:136356342-136356550
Coord A exon
chr9:136356551-136358013
Coord C2 exon
chr9:136358014-136359605
Length
1463 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
ACTGCACTGTGTCCACCCAGTCC
3' ss Score
6.93
Exon sequences
Seq C1 exon
CCCAGCCCTCGATGACGGCCTCGCCCCAGACCGAGGAATTCTTCGACCTCATCGCCAGCTCCCAGAGCCGCCGGCTGGACGACCAGCGGGCCAGCGTGGGCAGCCTGCCGGGGCTGCGAATCACCCACAGCAATGCAGGGCACCTCCGAGGCCACGGCGAGCCCCAGGAGCCGGGGGACGACTTCTTCAACATGCTCATCAAGTACCAG
Seq A exon
GTGGGCTGCGGCCCTGGGCGGGCGTGGCTCGCGGCCCCTTTGCCATCCACGTGTGTGGAGGCAACTTGTGTCCTGAGGGGTGAGGTGGGCGCTGGTTCTGCCATCTCCGGTCATGTTTGAGGGACTCCTGGGGGACTCAGCCAGTGTCACCACATGACCAGGGGTGTCTGAGCCTGAAGCCCTACTCCTGGGAACCCCGGGCTGCTGGAGACACCAGAGACCCCCCCTGGCAACCCCAGGACACTCCCAGGCTGTGCCACCCCCCTGCCATGCAGGAACTCGGGGTGGGGGCTGGGGGGTCACAGGTCCTGGAGCTCATGGCCTCAGGGATTCCCCACCAGCCCTCCACACCCGGCAGGGAAAACACGGGCCAGATAGCACCCCCAGAGTGGGGAGGGCAGGGGGATCCAGGGCTGCCAGCTGGCTGGTGGGACAAAAACAGGGACCATCCAGGGACCACACAGTGGACGGCATGGGCGGAGGGTCCAGCCCCAGAGGGCAGAGCCAGGGCCGGGGCTCCAGCCTGGCAGCCACGCCAGGAATGACCTCCTCATCTGTGTGGGGGTGAGCCAGGTAGGGTGGCCGGAGTGGAGACTGCTGAGCCAACTGCTATCCCAACTAGGACCTCAAACTCTGGGGGTCTCGCCATCCCTGTGGGGTGCAGCCATTGCTGGGAAGGGGTTCAGGGTCCGTAGACTTGGGAACAGGCTGGGGGTGGAGGCCGCTTGGCCCACCACGAACCAAGCCAGCACGTTTCCAGGTCTGCCGTCCTCCCCACAGCAGAGAGGAAACCTCGGCCCGGGGCCAGGCGTCCGACCAGCCACCTCCAAACCAGCCCCACCCAAGAGGCCCAGAGTCCCCCATCCACACGCATGCCTGCGCCAGCTCCCGTCCCTCCTGCTCCAGGCGCTTCAGAGAAGCCCAGACAACCCCTTGGCCCCCTGGCCTGCACACTGGAGCAGGCGAGGCCCACGGGGTCAGCCACCTGACACAAGGGGAAGCCCTGGGGGGCGCCACACTTCGGGCTCTGGAAGCTGAGACCTCAGGCCTGCCAGGGTCAGTCCCAGGCTGTGCTGGTTTCCAGGGCTGGGCAGAGGGACGGCCACGCATGCCCGTCCCTGGGGATCAGCAGATGTGGGGAGCAGGCATCCAACGCCGCCCTAGCCACTGTCTCCTGGGCCTGGCACACCCATGCCCAGTGGGAATCGCTGGACCTGCTTTTCCTGGGCGGGCCTGCCCTGGGCTCCTGCGGGTTGGTGGCGGGGCCACCAGAAGACTGCGCTCAGGGCCCGGGCTCCCAGCACAAGACCCCAGAGCGAGGCAGGCCCCAGAACCAATTTCCTGGGTGGACAGGGGGAAGCCCGTGAACAGTGCACGCTGGCCTCTGGAACCACCGCTGCTGACCAGCCCCGGACCACTGGGGCTGGGGGGGTGAGGCCGCCAACTGCACTGTGTCCACCCAG
Seq C2 exon
TCCTCCAGGATCGATGACCAGCGCTGCCCGCCACCTGACGTACTGCCCCGGGGCCCTACCATGCCGGACGAGGACTTCTTCAGCCTCATTCAGAGGGTGCAGGCTAAGCGCATGGACGAGCAGCGGGTGGACCTCGCCGGGGGCCCGGAGCAGGGGGCAGGCGGCCCGCCCGAGCCCCAGCAGCAGTGCCAGCCTGGTGCGAGCTAAGGCCCTGTGCCCACCGCCAGGCCCACCCTGCCCCCACTCCTGGACGCCGGTCTCACAGTCACAGCCACGTCCTCCCGAGGCCATTGCCGAGGACAGGCACTGGGCATGCAGCCCCACGGCCTCCCCGACCCAGGGCGACAGGCTCAGGCCAAGCTGCCCGTGGTGGGAGGGCGTGCTTCCATCCCGGGCTGGCCCCCATGGCCCTCAGCTTCCTCCCTTCTGCCCCTGCCGCAGGCCGGACGGGGCCTTCGGCATGTCGGCCCCGACCTGGTGCTGTCAGACTCCCGCATCCTCTCCCCCAAGCCCTTCCCGTTCTGCCCTGCCCTGCCAAATGTGAAACCCTGCTGTCTCCCCCACCCTCCCCAAAGGTGTCTCTGAGCCGCCTCTTGGGGCCACCAAGGACAGGGCCATGTTCTGTCCCCCCAGAGCTGGTCTTGGGATGGCCGTGTGACAGGCATGCTCCACCCCTCCAGCTTCGTCCTGGGGCAGGGCTCCCTCCAAGCCTGTCTCCCCACTCCCCGGCCAGAGGTCAGCAACCACAGAAGGCCCCCCAGACCACGCATGGCAGACCAGGCTGCAGTGGCAGCCCTGAGGTGCCCCCCGCCGAGTCCCAGGGCCCTGCAGGGGCCTCGACAGGAGCCGGGCCTATCTCTAAAGCAGAGGGAATGGCTGGGCATGAACTTCGACATTCCAAAACCCCAAGCCAGGAAAAAGGGCAGGGCCTGGTCCTAGGGATGCTTACTGGCAGCAAGAGCAGTGCCCAGTCAGGGTGGGAGGTAGCACCAGGCTCTGTGACCCTCACCCAAGTGGGGGGGTGGTCAGTGGAAGCTGGGGAGGCTTCACTCAGCTCAACCCTGCAGACCCCCCATATGAGAACCCCCCTCCTCCCACCAGCTGGGGGAGATGACATCACTGCTCTCTCCATGGGGAGGGGGCTCACAGGGCACCAAGTTCGGGATCCTAGGACTGGCAGGACCTGCTGGAGCCTGAGATGGGCCCCAGGGGCCTGAGGTTGCCTCCTCCTGTCCAGACCCAGCCTTGGCACCTCCCAAGACTGCCAAGGGCCCTACCATGGCCCCACAGCCCCCAGGGCTGGCAGTTCCATCTAGGAGGGTGCCTCTAGGCCCCACTCTCAGGCTAGGATGGAGAGGCAGATCTGGGCCTGGTGAGGTGACCTGCTTCTGGAGGGGCAGGGCCGCACCCGAGAGCAGGGACAGGTGCCCGAACACAGGGTCTCCAGGACGTAGCGCCCCCCCGCATACTTGAATGTATGTGCGTATTTATTGCTCACGTCTGTGCCATGTTGTCAATGGGTCCTTTCCAACCCAAGAGGTACATTTGTTTTTCTGTTTTTCCTGAAAAATAAAGTCGGCCAAGTGAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160360:ENST00000440944:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.948 A=NA C2=0.963
Domain overlap (PFAM):
C1:
PF0218812=GoLoco=WD(100=32.9),PF0218812=GoLoco=PU(47.8=15.7)
A:
NA
C2:
PF0218812=GoLoco=PD(43.5=14.5),PF0218812=GoLoco=WD(100=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGACGACTTCTTCAACAT
R:
GTGCCTGTCCTCGGCAATG
Band lengths:
344-1807
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains