RnoINT0067119 @ rn6
Intron Retention
Gene
ENSRNOG00000018666 | Gpsm1
Description
G-protein signaling modulator 1 [Source:RGD Symbol;Acc:628682]
Coordinates
chr3:3791278-3794359:+
Coord C1 exon
chr3:3791278-3791486
Coord A exon
chr3:3791487-3792885
Coord C2 exon
chr3:3792886-3794359
Length
1399 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
TGCATTGTGTGTCTGCCCAGTCC
3' ss Score
6.89
Exon sequences
Seq C1 exon
CTCAGCCCTCTGTAACAGCTTCACCACAGACTGAAGAGTTCTTTGACCTCATTGCCAGCTCCCAGAGCCGCCGGCTGGATGACCAGAGGGCTAGCGTAGGCAGCCTGCCTGGGCTTCGCATCACCCTCAACAACGTGGGGCACCTCCGAGGCGACGGGGACCCCCAGGAGCCAGGGGATGAGTTTTTCAACATGCTTATCAAATACCAG
Seq A exon
GTGGGCCTGTGTTCAGGAGAGAATAGGTGGGGCTTCATCCAGGCAGCCTAGTGGTGGCTCCACCAGCTGCAGAAAAGACACCTAGCAGCCCCACAGCAAGCTCTGTCTTGGCTGTCTCCGGCCTTATCTGAGGGATACCTGAGGAGAGGGAGAGACCATTCCCAGATGCCCATGCTTGAAGCCCCACTTCTGCCAAGGGGCTGAGGACCTCTAGAGATAACAGCCTTAGTGCACTTTGGTGCCAGAGTTCAGCCTGGGGTTGTCAGGTCCCCAAATCCAGGGATGTCCATTCCCGGCTTCCATACCTGGGCAGAGAAAGCTGAGGGTCAAGTGGTAGCCTGGAGTTGGGAGGGAAGGAGAGGGGAAGAGCTGGGATGTTAGCAGCTGACTGTAGGAATGGGAGCAGAAATGGCTCTGAAAGAGACCATATAGCATGGGTGGACAGGTAAGATGGAGAAGGCATGGGAAGGCAGAACCAGGGCAGGGCTACTCGTGAGTGGGCTTCACTAAATGGGATTGGGTAAGGCTGGGGTGTTTGGTCTGAGCCACCTACCCAAGGCCTGGCAGGGGGGGTAGTAAGTTCACCCTGCTGGCCAGCGCCCTCCAGCAGGAGCATGTACATGGTGGGGCTTGAGCAGACATGGGAGTGACTAGGGTCAGCATTCCACTTCTCCATTAGGCTAAGTTTCCAGATCAATGTTCATTCTCACAGAGGAGAGAGAACCACAGCAGCATCCAGACAGCCTCCTCTAAGCCAGCCCCTCCAGAGAAGCCTTACCCACTCAAATACCTGGGCCATCAGCTGCACCAGCTCCACTCCCATCTGCTTCGGGTCCTGAAGAGAAGCCAACACCTTTCAGGCCCCCCAGCCTCCACATCAGAACAGGCAGAACCTGTGGTGTCGGCTGATTGATCCAAAGGAGACCCTTGGTGGGCTTGGGGGTTTGGAGCAGTGGTGGTGATTTCCAAGCAACAAGCTCTGAGCTGCAGCCCCCAGGCCCTCCAAGTGCAGTCCGGGGCTGTGCCAGGTTTCAGGGTACTTCTAGGGGTCTAGTATCTGGATCAGCAAGTCCCAGGAGTTGGGCCTGGTGGCTGCTGACTTGTTCTACAAGCAGAATATATGACCCAGCCCTTTCTATTTATTTGGTTGGCTAGCCACACAGCTCTGGGGAAGTCTTCAGGAGATGTTGGTGAGACAGGGCTTTTAGCATTACCCCAGAATCATGGGCAAGAGGTGGCTGAAATAGGTCCCATTTGGACTACACCATTCTTCCAAGCTGGTGTTTGCTGTCCAGATTTTCAATAAGCCCATCACCCACCCAGTGCCAGCATAGGACGGTAGGTCCCCTAAAGGCCCAAGAAAAGCAAGGCCACCAACCTGCATTGTGTGTCTGCCCAG
Seq C2 exon
TCCTCCAGGATTGATGACCAGCGCTGTCCACCCCCTGATGTGCTGCCCCGAGGCCCCACCATGCCTGATGAGGATTTCTTCAGCCTTATCCAGAGGGTGCAGGCTAAGCGGATGGATGAGCAGCGTGTGGACCTGGCTGGGAGTCCAGACCAAGAGGCCAGTGGGCTGCCTGATCCCCGGCAGCAATGTCCGCCAGGTGCCAGCTAAGGCCTCACCCCTACAGCCAGCCATGCCCTACTCTGGACTCTGTAGGCTCACAGTTGTCCACAGTGGCCATGACCCCCCAGTAAGCCAAATCCTCCCAAGGCCATGATGGAGAGCCAGCTCAGCCCCAACCCCTTCCTCCCACTGAGCCAGATGGTGGGCACACACCCCTCAAGAACCCCCCACCCTAGGTGGTGGGCTCAGGCTAGAGCTGCTGTATGGGGGAGGGCATGCTTCTGTCCCCATATGATCCACAGCTTAACTGCAGGCCCTGCCCTGCCCTGTCCTGCCCCAGGCCGGGCCTTCAGCATGTTGGCCCCAAGCCCCGGTGCTGTCCAGAGTCTTCTCCCTCAAGCCCTGCCCTGCCAAATGTGAAATTCTGCCAACTCTCCCAAGCTCCCCAGAGGGGTTTCAAAGACTTCTGGTGGGGGCTACAGTGGCAAGGCATCTTCTGTCCCCCAGCTGGTCCTGGGACGGCTATGAAGGAGGTACACTGCTCTGCCTCACCTCCCCAGGGCAGGCCTATCCTGGTTGTGGCAGGCCTGGCTGTGCCCAACCCTGCTGTGGGAGATTGGCGGCTGTGAAGTCCAGATACCCTGACCTGATAGTCTCCAGACTTGTACTTGGCCTTTGAGAAAAGCTGGACCCCGCCTCTGGCAGCGGGAAGAGGCAAGCCTCCAAGCCAAGAGCATAGGGTCTTGTCCTAGGAGTGCTTGGCTGGCAGTGGACATTCATGAGGAATCTGCTCTACTAGATCCTCCAGGCCTCTTGGTGAACATCTACCTTGGATTACTAGGGAGATGGTATCTTGGCTTTCTCCCCAAGGAGGGGTCCAGCTGCAATATCTGAGTTGGACATAGGGCACTATAGCTGGGGTGGAGAGACTCAGGCAGAACTGAGAACTACATCCATGAGATAGACCCTTGGGGACCGTGGTCCTATTTCTTGCCTGCAGGCACTATAGGCAGCCCTCCTGGAGGGCTCTGTACAACCTTCTAACCCAGAGCCTCTTACCCTGTAGCCTAGGAGGGAGCCAGGGCAAGGGCAACTGGGGACCCAACTTCTGAGAGAGAGAGACACCATCACTCTGAGGGCAGAAGCGGAAACCAGAGCACAGGGTCTCGGGCGGGACACGGTGGCCGCCCGCATACTTGAATGTACATGCATATTTATTGCTTACACGTGTTTGCCATGTTGTTCACGGGTCCTTTCCAACCCGAGAGGTACGTTTGTTTTGTTTTACCCAAAAATAAAAAAATCTGCCAAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018666:ENSRNOT00000067840:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.881 A=NA C2=0.926
Domain overlap (PFAM):
C1:
PF0218812=GoLoco=WD(100=32.9),PF0218812=GoLoco=PU(47.8=15.7)
A:
NA
C2:
PF0218812=GoLoco=PD(43.5=14.5),PF0218812=GoLoco=WD(100=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCCAGGGGATGAGTTTT
R:
CATGGCCTTGGGAGGATTTGG
Band lengths:
356-1755
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]