MmuINT0073436 @ mm10
Intron Retention
Gene
ENSMUSG00000026930 | Gpsm1
Description
G-protein signalling modulator 1 (AGS3-like, C. elegans) [Source:MGI Symbol;Acc:MGI:1915089]
Coordinates
chr2:26345151-26348237:+
Coord C1 exon
chr2:26345151-26345359
Coord A exon
chr2:26345360-26346806
Coord C2 exon
chr2:26346807-26348237
Length
1447 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TCCATTGTGTGTCTGCCCAGTCC
3' ss Score
7.27
Exon sequences
Seq C1 exon
CTCAGTCCTCCGTGACAGCTTCACCACAGACAGAGGAGTTCTTTGACCTCATTGCCAGCTCCCAGAGCCGCCGGCTGGACGACCAGAGGGCTAGCGTAGGCAGCCTGCCTGGGCTACGCATCACCCTCAACAATGTGGGGCACCTCCGAGGCGACGGGGACGCCCAGGAGCCGGGGGATGAGTTTTTCAACATGCTTATCAAATACCAG
Seq A exon
GTGGGTCTGCCCTCAGAAGGCAATGGGTGGAGCTTCATGCAGGCCCGCCTAGTGGTGGTCCTCTGCCAGCTGCAGAAGACACCTAGCTGGACCACAGCAAGCCCTGTCTTTGCTGTCTCTGGCCTCATCTGAGGGATACCTGAGGAAGACGCATAGTAACAAGTACAGCCAGAGTGAGGGACCATCCTCAGATGCGCAGGCTTGAAGCCCTCCTTCTGCCAAGGGGCCAAGGACCTCCTGAAATAAGTCTCAGCATACTCTGGGGCCGGAGTTCAGCTTGGGGCTGCCAGGTCCCCAAATCCAGGATGTCTGTTACAGGCTTCCACATCTGGGCAGAGAAAACTGAGTGTCAAGTGGCACCTTGGAGTTGTGAGGGAGGGAGAGAGGGAGGGAAGGAGGGACAGAGGGAGGGACAGAGGGAGGGAGATCTGGGATGTTAGTGCTGGCTGTAGGAATGGGAGCAGAAACGGTCCTGAAGAAGACCACACAGCATGGGCTGACAGGTGAGATGGAGAGCCTAGGCCTGGGAACACAGAACCAGGGCAGAGCTACCCATGGATGGGTTCCACTGTATGGGATTGGGTGAGGCTGGGGTGCTGCGAGCTGAGCCACCTACCAAGGCCTGGCAGCAAAGGGGGTGGGTGGTACGTTTATCCTGCTGGCTAGCTGCCCTCCAGCAGGAGCAGGTACATGGTGGGGAGTAAGCAGGGTCAGCATTCTGCCTGTGTATCAGGCTAAGTTTCCAGATCAATGTTCATTCTCACAGAGGAGACAGAACCACAGAATCGTCCAGACAGCCTCCTCTAAGCCAGCCCCTCCTGAGAAGCCTTGCCCACTCAAATACCTGGGCCATCAGCTGCACCGGCTCCACTCCCATCTGCTCCAGGCCCTGAAGAGAAGCCAACACTTTTCAGGCCCCTCAACCTCCACATCAGAACAGGCAGAGCCTGTGGTGTCAGCTGTTGATCCAAAGGCAACCCTTGGTGGGGTTGGGGTTGTAAAGTAGTGATGCTAATTTCTAAGCAACAAGCTCTGAGCTGCAGCCCCCAGGCCCTCCAGGGCAGTCCAGGGCAGTGCCAGGGTTCAGGGTAGTTCTAGGGGTCTAGTATCTGGATCAACAAGTCCCAGAGTTGGGCCCAGTGGCTGCTGACTTGTTCTATGACCAGAATATACGACCTAGCCTTTTTTATTTGGTTGGCCAGCCACAGCTCCGAGTAAGTCATCAGGCGATGCTGCCAAGGCAAAGCTTTTAGCATTACCCCAGAGCCAGGGGCAGGAGGTGGCTGAAATAGGTCCCACTTGGATTACATCATTCTTCCCAAGCCAGTGTTTGCTGTCTTCAGATTTCCAATAAGCCCATCACCTTCCCAGTGCCAGGATAGGTCCATAGGCCCTCTAAAGACCCAAGAAATACAAGACCACCAACCTCCATTGTGTGTCTGCCCAG
Seq C2 exon
TCCTCCAGGATTGATGACCAGCGCTGCCCACCCCCTGATGTGCTGCCCCGTGGCCCTACCATGCCTGATGAGGATTTCTTCAGCCTTATCCAGAGGGTGCAGGCTAAGCGGATGGATGAGCAGCGTGTGGACCTTGCTGGGAGTCCAGAGCAAGAGGCCAGTGGGCTGCCTGATCCCCAGCAGCAGTGTCCACCGGGTGCCAGCTAAGGCCTCGCCCCTACAGCCAGCCATACCCTACTCTGGACTCTGTAGGCTCACGGTTGTCCACAGTGGCCATGATCCCCCAATAAGCCAAATCTTCCCAAGGCCATGATGGACAGCCAGCTCAGCCCCAGCCCCTTCCCACTGAGCCAGATGGTGGGTGCACAAGGCCCCCCCATCCCAGGTGGTGGGTGCAGGCTAGAGCTGCTATATGGGGGAGGGCATGCTTCTGTCCCCATGGATCTCCACAGCTTCCTGCAGGCCTGCCCTGCCCTGCCCTAGGCCGGGCCTTCAGCATGTTGGCCCCGAGCCCCGGTGCTGTCCAGAGTCTTTTCCCTCAAGCCCTGCCCTGCCAAATGTGAAACTCTGCCAACTCTCCCAAGGCCCCCAGAGGGGCTTCAAGGACTTCTTCTGGTGGGGGCTACAGTGCTAAGGCATCTTCTGTCCCCCAGCTGGTCCTGGGATGGCTATGAAGGAGGTACACTCTGATCTGCCTCACGACCCCAGGGCAGGCACTATCCTGGCCTGGCTGTGCCCAACCCTGCTGAGGGAGATTGGCAGCTACAAAGTCCAGACACCCTGACCTGGTAGTCCCCAGCCTTGCACTTGGCCTTTGAGGAAAGATGGAGCTTGCCCCTGGCAGAGGGGAGAGGCAGGTCTCCAAGCATAGGGTCTTGTACTAGGAGTGCTGAGCTCTGGCTGGTAGTGGACGTTCATGAGGGATCCTCTCAACTAGATCCTTCAGTCCTCTTAGTGAGCATCTACCTTCTATTACTAGGGAGATGATATCTTGGCTTTCTCCCCAAGGAGGGGTCCATATCTTAATTGGACACAGGGCACTGTAGTTGGGGTGGAGACTCAGCCAGAACTGCCGGGGCATCCATGAGACAGACCCTTCGGGACCGTGGTCCTAGTTCTTGCCTACAAGTCCTATAGGTAGCCCTACTGGAGGGCTCTGTACAACTGTCTAACCCAGGGCCTCTTACCCAGAGGGCCAGGGCAAGGGAAACTGAGGACCCAACTTCTGAGAGGGAGAGGCAACATCACTCTGAGAGCAGAAACAGATACTAGAGCACAGGGTCTCGGGCGGGACATGGTGGCCGCCCCGCATACTTGAATGTACATGCGTATTTATTGCTTACATGTGTTTGCCATGTTGTTCATGGGTCCTTTCTGACCCGAGAGGTACATTTGTTTTGTTTTACCCAAAAATAAAAGTCTGCCAAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026930:ENSMUST00000066936:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.809 A=NA C2=0.894
Domain overlap (PFAM):
C1:
PF0218812=GoLoco=WD(100=32.9),PF0218812=GoLoco=PU(47.8=15.7)
A:
NA
C2:
PF0218812=GoLoco=PD(43.5=14.5),PF0218812=GoLoco=WD(100=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACGCATCACCCTCAACAA
R:
CGTGAGCCTACAGAGTCCAGA
Band lengths:
356-1803
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types