GgaINT0124124 @ galGal4
Intron Retention
Gene
ENSGALG00000023517 | AGPAT2
Description
1-acylglycerol-3-phosphate O-acyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:325]
Coordinates
chr17:7742570-7743519:+
Coord C1 exon
chr17:7742570-7742642
Coord A exon
chr17:7742643-7743390
Coord C2 exon
chr17:7743391-7743519
Length
748 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
GGCTCCTCTTGTGCTCCCAGGCA
3' ss Score
7.87
Exon sequences
Seq C1 exon
GTCCCGGTGATCCCCGTGGTGTATTCCTCCTTCACCACTTTCTACAACCCAAAGAAGAATCTGTTTACGTCAG
Seq A exon
GTATGAAAGCGCCTTCATAGCTTCTCAGAGATGGAGTGATACCGTGTGGGGGTGTGGGAGGGGGGCCGAGCAGATGCGTGGAGGCAGTTCAGAGCACTTGGCGTGAGAGCTGGGCTGGATTAACTTGGAAGAATGTAATTAAACGTACCAAGGGGTGTTTGCATTAAGTATCAGGTGCCACCTCTCCCTGTCATAGCCGGCACAGCCCAAGTCGTTTGGAGAGGGATTGTGTTTGGGGAAGAAGCACCGTGGTCTGAATTCTGGTCTTTCACAGCAGGGACCCCTCTGCAAGTTGTGTTAAAACACTTAAGTCTGTCAGTGTAAGAGCTGGGCAGGAGGTTGGCTTTCAACCAGCGTGAATGGATAACGTTGGGAGCAAGCCTTCCCTCTGCCTGCTGGCTGGAGGTAGGAGGGCTGGGCAGGAGCAGATGGAGGGAGCACCTGGTGCTGAGCTCTGTGTGCTCACCTCAGCCCTGCAGAGTTCAGAGTGGGAGCAGCCTCTAACGTCCCCCAGATCAGGGCACGGGAAATGCTTTGCTCCTTGGAGCAGCTATTTGGGGCAGGGTGTAATTCTCAGAGCAGCCTCTTCCTCTGAGGGCAGCACAAGCTCTGCTTGCAGGGGCAGATGCCTGCAGGGATGGGTACCTGGGGGGCTGCAATGGGTCTGTCAACGGCAGGCCTTCTGTAAGGGCAGAGAGCAGTGCTCCTGTGTGGGGAGGTTTCTCAAAGGCTCCTCTTGTGCTCCCAG
Seq C2 exon
GCAAAATCAAGGTGGAGGTTCTCCCTCCGATAGAAACCAAAGGGCTGACATCAGATGACGTCTCTGACCTCACTGACAGATGCTACAACCTCATGAGGGAGACCCTCTTCAGGCTGTCGGGCCGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023517:ENSGALT00000039021:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0155316=Acyltransferase=PD(6.2=32.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGATCCCCGTGGTGTATTC
R:
GCCCGACAGCCTGAAGAGG
Band lengths:
190-938
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]