MmuINT0012733 @ mm9
Intron Retention
Gene
ENSMUSG00000026922 | Agpat2
Description
1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta) [Source:MGI Symbol;Acc:MGI:1914762]
Coordinates
chr2:26449107-26450372:-
Coord C1 exon
chr2:26450300-26450372
Coord A exon
chr2:26449283-26450299
Coord C2 exon
chr2:26449107-26449282
Length
1017 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
AGCCACTGCTTCCTCCCCAGGAA
3' ss Score
7.86
Exon sequences
Seq C1 exon
GTGCCCATCATCCCCGTGGTGTACTCGTCTTTCTCTTCCTTCTACAATGTCAAGACGAAGCTCTTCACCTCAG
Seq A exon
GTGAGCCATCAGCACACAGGAGCTCACAAGCCTGCCGTGCTCTCTCTGTTACTGACCTTGAGTCTGGGTTGTATGGACTCCAGGCTGAACTACAGCTCCTTATGTAGCAGAGGATGACCTTGACCCTCCCCGTGCTTGGTTGATAGGTTTGTACTGCCATGCCAAGGTTATGTGGTGCTGGGTTTCAGTACTCTCCCTTCTAATGCAGCAGTACTTGGGCCCCTACTAGCAGAGTTCCCACTTCTGGGTGGTGAATGAATGAATGAATGAATCTGGAACAAACATTGCATCATTTCATTGCTCTTTCTAAATGGGGTTTTTTTCTTTCTTTCTTTCTTTTTTTTTTGGTTTTTAGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCCTGCCCGGCTCAGGGTAGCGTTCTTGAGAGCACTGTTGATCCAGGCTGTACAACAGAAATAGGGACCTACAGTGACCTCTGCTGGTGAGGGTAAGAATTCTAGCTGTATGGGCTCCCCTACGTGGGGCAGCTCACAAGTGCAGCCTCTGCCGCTTCACCTCCGAAGCACTAGCTTCCACGCAGGTACCCTGAGCCTGCATGTGGGTGATGCATGTGGTAGTCAGGGTAGAGTCAGAGGTTAAAGGGCTGTGGGACGAGCCAGGCTCTGTCTCCAGCAAGTGCCCAGCTCCAAGGAGGACGGAAGGAACAAGTATAATAGAGGATGATTAGGGGTCGCTGAGTGCAGTGCCAGCAGCTGCGGCAGACATGCCCTGAGTCATAGGGAGTGGCTTCGGGAGAGGGTAGCATTGCTAATTGCCCCAATTTCCAATGTGTGCGCTGCCCGGGAGTTGAGGATGGCCAGGCTCTGGTTAGAAGAGGCTGGGCAACAGGAAGCCTGCTGAGTAGAGGTGACTGACAGCCACTGCTTCCTCCCCAG
Seq C2 exon
GAACAATCAAGGTACAAGTGCTGGATGCTGTCCCTACCAATGGTCTGACAGATGCTGATGTCACCAAGCTGGTGGACACTTGCTACCAGTCCATGAGGGCCACCTTTCTACAGATTTCTCAGATTCCCCAAGAGAACTCTGCCATTAAGGAGCCTGGGGTCTTGCCAGCCCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026922-Agpat2:NM_026212:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0155316=Acyltransferase=PD(6.2=32.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATCATCCCCGTGGTGTA
R:
CTACTGGGCTGGCAAGAC
Band lengths:
246-1263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: