RnoINT0015244 @ rn6
Intron Retention
Gene
ENSRNOG00000019466 | Agpat2
Description
1-acylglycerol-3-phosphate O-acyltransferase 2 [Source:RGD Symbol;Acc:1309229]
Coordinates
chr3:4044542-4045934:-
Coord C1 exon
chr3:4045862-4045934
Coord A exon
chr3:4044917-4045861
Coord C2 exon
chr3:4044542-4044916
Length
945 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ATCCACTGCTTCCTCCCCAGGAA
3' ss Score
9.02
Exon sequences
Seq C1 exon
GTACCCATCATCCCTGTGGTGTACTCCTCCTTTTCCTCCTTCTACAATGTTAAGACGAAGCTCTTCACCTCAG
Seq A exon
GTGAGCCGTCAAGCACACACAGGGCCTCACAAGCCTCCCTGCCATGCTCCCTCTCTGTAATTTACTCATGAGTCAGGCTTTTATGTATCCCAGGCTGACCTACAACTCCTTATGTAGCAGAGGATGACCCTGACTCCTGCTTCTACTTCCCCAGGGCTAGGATTGATGATGGCTGTGCCTAGTTTATGTGGTGCTGGGTTTCATGCATGGGAGACAGGCACTCCCCCAACTGAGCTACAATCCCACCCCTCATGGGTCCTTTCTAATTCAGCAGTACTTGGGCCTCTACTAGCAGCGTTCCCACTTCTGGTGAATGAATGAATGAATGAATGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAATGAATGAGTCTGGGACAACCATTCCATCATCTCATTGCTCTTTCTAAACGGGTTTTTCAGTTTTTCAGTTGAAAACAGGTTCTAAACAGTCGAGGCTGGACAACAGAAGTAGGGACCTACAGTGGCCCCTGCTGGTGAGGAGTGGGAATGCTAAGCTGTCTAGGCTCCCCTACAGATGGGGCAGCTCCCAAGTGCAGCCTCTGCCTCTTCCACTGGGGAGCACTGGCATCCACACGTGTAGGAGTCAGGGTAGAGTCAGAGCAGTGGGACGAGCCAGGCTCTGTCTCCAGCATTTGAGCCCCAAGTGCCCAGCACCAAGGAGGACAGAGGGAGCAAGTGTGACAGGGGACGATTAGGGGGTCACTGAGTCCAGTTTTGGGGGCAGAGATACGTACTTATAGGGAGTAGCTTCAGGGGAAGGTACAGTTGCTAAAAGTTACTGGCCGCACATGCTGCCCCGGTGTCAAGCATGTGTGCCTTGCCCAGGAGTTGAGGAGAAGCCAGGTGAGTAGAGGTGATGGACAGCACTGTGGGGCTGCTAAGCCCCTGACATCCACTGCTTCCTCCCCAG
Seq C2 exon
GAACGATCAGGGTACAAGTGCTGGATGCTGTCCCTACCAATGGCCTTACGGATGCTGATGTCACCAAACTTGTGGACACTTGCTACCAGTCCATGAGAGCCACCTTTCTACAGATTTCTGAGATTCCCCAAGAGAACTCTACCATTAAGGAGTCTGGGGTCTTGCCAGCCCAGTAGCCCAGGCTACAGGACCAGGGGAGCTGGGGGAAGACCAATGGGAAGCAGAGGCTGAAGAGTGGACAGAAGGCCGCAGCCTCCCACTTACCAAGCATCATCATAGCCTGCTCCCGTGCTGGCCTGGCTCTCCCTGGGGCCTGGAATCAGGAAGCCCCTTCTGGCATAGGCCTTAAACCCAGGACCCTATGTAATTTCCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019466:ENSRNOT00000026408:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF0155316=Acyltransferase=PD(6.2=32.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGTGGTGTACTCCTCCTT
R:
GGGAGCAGGCTATGATGATGC
Band lengths:
350-1295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]