GgaINT0124220 @ galGal3
Intron Retention
Gene
ENSGALG00000008750 | WDR85
Description
NA
Coordinates
chr17:1976839-1977718:+
Coord C1 exon
chr17:1976839-1976911
Coord A exon
chr17:1976912-1977652
Coord C2 exon
chr17:1977653-1977718
Length
741 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TGTATATTGCTCTTTTGCAGACA
3' ss Score
9.66
Exon sequences
Seq C1 exon
GAGGAGATGACAGCCTGCTGAAAGGCTGGGACACCAGATGCAATCCAGAGACTCCAGTGTTCACCAGCAGGAG
Seq A exon
GTAAGCAAGCGATGCCAGCAGCTGGAGCCCACAGCTATTGTGTCCCTTCCCAAGCTGCTGCACTCAGAGATGAGCGATGAGTGGAGTTTTGTTTCTGCCTCATTTGGGAAATTGAGAGAGAAAATATATCTCTTTTCATCAGGCTTTTCATCAGGATGGCTTGAGGTTGAAATTTTCTTCTCCATGTCCTTCTAAACAAGCAACTGCTCACTTTTTTGGGGGGGATTTTTCCATGTGTTAAATTGTGGAAGTTTTTTTAGAAAATGTTTCATTCTCCACTCATTTCAAGTAATTTTTTTTCCTATTTTTTTCTGATGGAATGAGGTATCTTGCAGAGTATGATTAAAGCAACATGAACAGTTTGTCAGTGAAATTTTATACATAGCCTAAAAATGCTCATCATTATTATTGCTATGGAAATATAGATTATATTGAGAATAAAGTCTTCTGGGAATTGTGTTGTTTTGCTGAAATTCTTATGGGCTCTGAAGAGCAGTTTATGGTCCAAGTATTATTAGAAATCGTTCATGCCAAGATAATGTATGATTAGAAGTTTTTATCTAGAAAGGCAGTTGGATTGTGTGGCTGGAACCCAGTATGGGCTGACATTTGAGCTCACCTTCCTCTGCTTTCCTGAAACATCTTGGTGCAGCAATATGCACCCCAAAGCCTTGAAATTCAAGGAAGAACCCCATTTCAAATAGTGTGTCTTATTTTCTGTTGTATATTGCTCTTTTGCAG
Seq C2 exon
ACACTCAATGGGTGTATGCAGCATTCAGTGTAGTCCCCACCGGGAGAACCTCCTGGCTACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008750:ENSGALT00000014239:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(20.0=32.0)
A:
NA
C2:
PF0040027=WD40=FE(55.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]