RnoINT0050769 @ rn6
Intron Retention
Gene
ENSRNOG00000008102 | Dph7
Description
diphthamide biosynthesis 7 [Source:RGD Symbol;Acc:1304868]
Coordinates
chr3:2176378-2176611:+
Coord C1 exon
chr3:2176378-2176447
Coord A exon
chr3:2176448-2176545
Coord C2 exon
chr3:2176546-2176611
Length
98 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
CTGTCCCCCTTTGCCTACAGACA
3' ss Score
10.11
Exon sequences
Seq C1 exon
GGGGAGATGACTGCCTTCTGAGAGGCTGGGACACTAGGATGCTGGGCAAGCCTGTCTTCACTAGCAAAAG
Seq A exon
GTACCTGGCTCCAGGGTCAGAGGAAGCTTGGGTGTGTCCTCTCCGTGCTCTCGTCTTGAGAGATTCACATGTACTGGGCTGTCCCCCTTTGCCTACAG
Seq C2 exon
ACACTCCATGGGCGTGTGCAGCATCCAGAGCAGCCCCCATCGGGAGCACATCCTGGCTACCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008102:ENSRNOT00000046898:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(20.0=33.3)
A:
NA
C2:
PF0040027=WD40=FE(55.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACTGCCTTCTGAGAGGCT
R:
CTTCCGGTAGCCAGGATGTG
Band lengths:
130-228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]