MmuINT0175812 @ mm10
Intron Retention
Gene
ENSMUSG00000026975 | Dph7
Description
diphthamine biosynethesis 7 [Source:MGI Symbol;Acc:MGI:1914478]
Coordinates
chr2:24968885-24969115:+
Coord C1 exon
chr2:24968885-24968954
Coord A exon
chr2:24968955-24969049
Coord C2 exon
chr2:24969050-24969115
Length
95 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
CTGTTCCCCTTTGCCTGCAGACA
3' ss Score
11.06
Exon sequences
Seq C1 exon
GGGGAGATGACTGCCTTCTGAGAGGCTGGGACACTAGGATGCTGGGCACACCTGTCTTCACTAGCAAAAG
Seq A exon
GTACCTGGAGCCAGGGTGAGAGCTTGGGCGTGGCTCCTCCATGCTCCTGTCTAAGAGATTTCACATGTACCTTGTCTGTTCCCCTTTGCCTGCAG
Seq C2 exon
ACATTGCATGGGTGTGTGCAGCATCCAGAGCAGCCCCCATCAGGAGCATATACTGGCAACTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026975:ENSMUST00000028351:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(20.0=33.3)
A:
NA
C2:
PF0040027=WD40=FE(55.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACTGCCTTCTGAGAGGCT
R:
CCAGTTGCCAGTATATGCTCCTG
Band lengths:
127-222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types