GgaINT0124354 @ galGal4
Intron Retention
Gene
ENSGALG00000004719 | SPTAN1
Description
spectrin alpha chain, non-erythrocytic 1 [Source:RefSeq peptide;Acc:NP_001036003]
Coordinates
chr17:5156001-5156603:+
Coord C1 exon
chr17:5156001-5156111
Coord A exon
chr17:5156112-5156525
Coord C2 exon
chr17:5156526-5156603
Length
414 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
3' ss Seq
GGAGAATCTTTTCACTTCAGGCA
3' ss Score
2.79
Exon sequences
Seq C1 exon
GCTTTTCTGCTGAACGAAGACCTTGGTGATTCTCTGGATAGCGTGGAGGCTCTTCTAAAGAAGCATGAAGATTTTGAGAAATCCCTAAGTGCTCAAGAGGAGAAGATCACA
Seq A exon
GTAAGACATTTATATTGGGTGATCACTAAAGAGGCGAGAAATAAATGGATTAGTTGATTGAAGAGGCAACGTTGGCAGGGACTGACAGAGAAGAACATGGTTTGCTCTGCAAAATGATTCACTGTGGAAAATAATCAGTGGAAAGGCTAAGATGGGGCTTGATTGCTGCCTCAGACAGCTGAGTAACCCAGTTCCTTGCATATCATGCCAGCATGCGGAAGGGGGTGGACTTTGATAAATGGTCATTTGTACACATGTAGGAGGATGGTTTAGACTAAAAGCGTTTAAACAACAGTAGCTATCTTAATGGCTGATAGTTTTTAATGTGATGAGCTTTTGAGAATTAACTTACTGTGTAGACTTGCACAAACAGTTTTTATTACACAAAATAAATGGAGAATCTTTTCACTTCAG
Seq C2 exon
GCACTGGATGAGTTTGCTACTAAACTGATTCAAAATAACCATTATGCCATGGATGACGTTGCTACGCGCAGAGATGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004719:ENSGALT00000039770:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(34.3=100)
A:
NA
C2:
PF0043516=Spectrin=FE(23.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]