DreINT0155161 @ danRer10
Intron Retention
Gene
ENSDARG00000019231 | spna2
Description
spectrin alpha 2 [Source:ZFIN;Acc:ZDB-GENE-051113-60]
Coordinates
chr21:13074711-13074995:+
Coord C1 exon
chr21:13074711-13074821
Coord A exon
chr21:13074822-13074917
Coord C2 exon
chr21:13074918-13074995
Length
96 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGA
5' ss Score
4.8
3' ss Seq
TTTTGTACTGAATTATACAGGCG
3' ss Score
5.53
Exon sequences
Seq C1 exon
GCTTTCCTGCTGAATGAAGATCTGGGCGATTCTCTGGACAGTGTTGAGGCTCTTCTAAAGAAACACGAAGACTTTGAGAAATCCCTCAGTGCTCAGGAAGAAAAGATCACT
Seq A exon
GTAAGAATTGACACACTGGCAATGTACAATACAATTTAAACCTTCCATAATAAACCTCACTCAATTTTACTTTAAATTTTGTACTGAATTATACAG
Seq C2 exon
GCGCTGGATGAATTTGCCACCAAACTGATCCAGAACAATCACTACGCCAAGGATGATGTGGCCACCCGCAGAGATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019231:ENSDART00000102251:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(34.3=100)
A:
NA
C2:
PF0043516=Spectrin=FE(23.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAATGAAGATCTGGGCG
R:
GGTGGCCACATCATCCTTGG
Band lengths:
170-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]