GgaINT0124719 @ galGal3
Intron Retention
Gene
ENSGALG00000008819 | LRSAM1
Description
NA
Coordinates
chr17:1936061-1936989:-
Coord C1 exon
chr17:1936919-1936989
Coord A exon
chr17:1936161-1936918
Coord C2 exon
chr17:1936061-1936160
Length
758 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
ACAGCACTTCTGTCTCCTAGCTG
3' ss Score
5.19
Exon sequences
Seq C1 exon
ACTAAGGATGGAACAGCTGATGGCAATCACACAGGAGGAGACAGAGCATCTACGCAGAAGGGAAGTGGCCT
Seq A exon
GTAAGTCCAAATAACTGGGGTGGTAGGTTAGGGCATTTAGAGGTGCCCTGAAAGATGATTACTGTGTGGGAGATGCTCTGCTACAGACATGTTCTTGCTGTTTGTTGCTTCATGAAGTAAGGCAGACTGGAAGGGGATAGCATTGTACACATACCATAGCTGATCAGTGCTCCCACCTGCAACTCACTGCTGATTCTCAGGTGTGAGCTGTGCCCCTGATGTAGCTAGAGTGTTTTGCACAAGCAGTCTGAGACTGAATGTAAGGCATCCTGTGTGCACACAGAGCACTTTCTATTTTAGAGGTACCAAGCAGATGTTAACTGATCGGATTCATGAGGCAGGAAGCATATTAGGAGGTAACCAACAATGCCACAAGGGAACCATTTCTGCTCATTGTGAACATGAATGGATCTGCTGGGTTTACGATGGAAATGATGTGTGTGTTATCACCCCAGGGGTGGATGGTTCACAGCAGTACAGACAGGGCTGTAGCCTGTCTAAGGCACTGATTTTGCTTCTCCAAATACTGAAGAGATGCAAGCAGAGCGGGATTTATTTATGTGATTTTCCAATAAATAGCCACAATTCTTGTAGCTGAATGAATCTCCTCGTGAATGAATGAAATGGGAAAAATGGGAACAGGCTGAAATGAGAGAAAAGGCACTATTAATTGCAAGTTACTGTAGCAGCAGTGGCAGATTAGTATCTGTTCCAGAGACAAGCTCCTGATACAGACTGACAGCACTTCTGTCTCCTAG
Seq C2 exon
CTGCCATGCAACAAATGCTGGCTGAGAGCTACAAGAACAAGCTCATCCAAATGACCTATGAATCTCGTCGGCAAGACCTTGTCAGCCAGGCCTGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008819:ENSGALT00000014334:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.560 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF136461=HEAT_2=PU(21.6=84.0)
A:
NA
C2:
PF136461=HEAT_2=FE(34.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]