RnoINT0087322 @ rn6
Intron Retention
Gene
ENSRNOG00000022312 | Lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:RGD Symbol;Acc:1564403]
Coordinates
chr3:11988165-11989645:-
Coord C1 exon
chr3:11989575-11989645
Coord A exon
chr3:11988265-11989574
Coord C2 exon
chr3:11988165-11988264
Length
1310 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
TCACAGCCTTCTCTCTGCAGCCG
3' ss Score
8.77
Exon sequences
Seq C1 exon
AATACGAATGGAGCAGCTGATGTCCATTACCCAGGAGGAGACCGAGAACCTCAGGCAGCGTGAGATCGCCG
Seq A exon
GTGAGTCGTGCGAGGTTTGTGGCCAGAACCTTCAGGTGGACCATTGCTCTGTTAGCCATGCAGAGCACTGAGTGTCCACTCTGAAGAAGGGCAGCCAAGTCTGCCATGGAGCTCAGGCCCTGGGGTCAGACAAGCCTAGATTCCGAGTCTCAAGGTTTCTGTCTGTAGAATGGGGAAAACTACAGTTACAGAGAAAACACGGGACTTTGAGGAGGATCCTAGGGGTCAGGCCTGGGTCACAGCCTAGCTACTCTGACTCCTGCCACTGAGAGCCAGTGTCACATGGGCTCCTGGGCAGACTGCCCCTTCCTGATGTGCCCAGTGTGGCCCAGAGCTCCACGTGTACCCACCCATGACACCTGCTCCAGACAGGTCTGAGAGCCTGCAGCCAGGGACTGAGGAAGGCCTCTGAAGCAGTGCCTGCCCTTAGTCAAAGTGGAGATGGGGTATCCTTATCTTTGGGTCCTTTGTCATGGAAGGTCTGTCTATGTGCCAGACTCGGAGCCAGACATTTGGCATACATGTGCTCACCACAGCTACAGAGGGGTCACCAAAGACCAGCAGTGGAAATCACCTGAGGGATGTTAATTCCATAGAGGTGGGGCTGGCATCCAGGGGGTTGTGTTTTTTAAAGATTTATTTATTTTATTATATATGAGTACACTGTGGCCATTTTCAGACACACCAGAAGAGGGCATCGGATCCCATTACAGATGCTGTGAGCCACCATGTGGGTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTTAGTGCTCTTAACCACTGAGCCATCTCTCTAGCCCCCTACCCTTTACTTCTCTACTAAGTAAAAAAAAAAAAAAAAAAAATCAACAAAGGAACTAGAGAGTTGGCTCAGTAGTAACTCTTCCAACGGACCTGGGTTCTAATGCCAGGACTGTCTGTAACTCCAGTCCCAGGGAATCCAGTGCCATCTTCTGGCCTCCCCAGGCTCTGCATGTAGGTGGTGCTCAGGCCTCAAACTCAGAGATCCGACTGCCTCTGCTTCCCCAGTACTGGGATTAAAGGTGTGCACCAGCACAGTCCAGCCATGTAGACATTAAGGCTGGGTACTGGTACTCATGTGCAGTCATGACTCAGGATGCTGGGACAGGAGGATTGAGAGTTCAAGGCCAGTCTGGGCTGTCTAGCAAGACTGTCAAGGAAGGAAGATGGAAGGAGGGACTTTGTTTAAGAGTGACTATCCACCAGTAATCAAGTGAACCCTTTGGGCCTCACCCAGGGAACCCTAGCCTTTTCTCAGCGGCTCACAGCCTTCTCTCTGCAG
Seq C2 exon
CCGCCATGCAGCAGATGCTGACCGAGAGCTGTAAGAGCCGGCTCATCCAGATGGCCTATGAGTCCCAGAGGCAGAGCCTGGTGCAGCAGGCCTGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022312:ENSRNOT00000060186:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.680 A=NA C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]