GgaINT0124799 @ galGal3
Intron Retention
Gene
ENSGALG00000005060 | ENG
Description
NA
Coordinates
chr17:5516579-5516897:+
Coord C1 exon
chr17:5516579-5516716
Coord A exon
chr17:5516717-5516852
Coord C2 exon
chr17:5516853-5516897
Length
136 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TCTTCCTCCCCTCCTCACAGCTC
3' ss Score
11.34
Exon sequences
Seq C1 exon
CCCATCAAGGACGTGGTGAACATCACCCTGCGGGACATCAGCTGCCAGGCTGAGAAGAACGCCACACACTTCATGCTGCACACCCTGCTCAGCCACTGCGGCACCTCGCTGGAGAACCACGGCCATGCCAACAACGAG
Seq A exon
GTGAGCACTGCTGGCCGTGGTGCTGATGGGGAGACCCTGGAGCCACCCCAACCCCATGGGGAGACCACGGCAGGGGAGATGCTCATGGGGACACCTCTGTGGCCAATCTGACCGAGTCTTCCTCCCCTCCTCACAG
Seq C2 exon
CTCGTCCTCAGCCTGTCCAAGGGCTCGGTGCTCAGGAGCGTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005060:ENSGALT00000039898:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATCAAGGACGTGGTGAAC
R:
GAGCCCTTGGACAGGCTGAG
Band lengths:
164-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]