BtaINT0009070 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BG97]
Coordinates
chr11:98509474-98509884:+
Coord C1 exon
chr11:98509474-98509620
Coord A exon
chr11:98509621-98509845
Coord C2 exon
chr11:98509846-98509884
Length
225 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
CCTTGGCTCTCTTCCTGCAGGTG
3' ss Score
12.73
Exon sequences
Seq C1 exon
CTGGCCCAGACTCTGCTATGCACCATCAAAAGCCTGACCTTCGGGGACTCCAGCTGCCAAGCTAAGGAAACAGAAGATGAGTTTGTCTTGAGCAGTGGCTACTCCAGCTGTGGCATGGAAGTGATGGAAAATGTGGTCAGTAACGAG
Seq A exon
GTAAGACCTGGAGTGGGAAAAAGGGATGGTGCCCCCTCCAGGTGCCTCCTGGATCTTCCAGGCAGAGAGGCTTTGGGGAGAGCGGGTGTGGTGCTAGTAGGAAGACAAGACAAGCTTTGCCATTGGTTGACTCAGTTTCCCCATCCAAAAAAATGGGTTCATTGGGTGGGATACCCTCTGGGCTCCTCTCGGGCTCTGAACACCTCCTTGGCTCTCTTCCTGCAG
Seq C2 exon
GTGGTCATCAGACTCCTGTCAAGCTCATCACCGCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046303:ENSBTAT00000011846:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGACTCTGCTATGCACCA
R:
CTCTGCGGTGATGAGCTTGAC
Band lengths:
181-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development