RnoINT0054943 @ rn6
Intron Retention
Gene
ENSRNOG00000050190 | Eng
Description
endoglin [Source:RGD Symbol;Acc:1593188]
Coordinates
chr3:11712676-11713076:+
Coord C1 exon
chr3:11712676-11712813
Coord A exon
chr3:11712814-11713037
Coord C2 exon
chr3:11713038-11713076
Length
224 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CTTCTCGGCTGTCTTCACAGGTG
3' ss Score
10.24
Exon sequences
Seq C1 exon
ACTCTACAGTGCACCATCACAGGCCTGGCTTTCTGGGACTCCAGCTGCCAGGCTAAAGACCAGGACGGCCACCTTGTCCTGAGTAGCACCTACTCCAGCTGCGGCATGAAAGTGACAGATCATGTGATCAGCAACGAG
Seq A exon
GTAAGGCTTGGGATCAGGAAGGTACCAAATCCTGCAGAGTTGGTGTCCCCCACCCCACCCCACCCCCAGGCACCTTACTGATCCCCCGGGGCTGAGGGACATTTCTGGGAGCAGGGAGCAGGACTGATGGGAAGCTTGGCCATCCCATCCATAACTGGGGTCTGGCAGGCGGGCTGTCCTCTGGGGCTTTCTGCCTCTGACCAGCTTCTCGGCTGTCTTCACAG
Seq C2 exon
GTGATCATCAATTTGCCATCAGGCTTACCACCACTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050190:ENSRNOT00000071801:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(22.0=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(5.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAGTGCACCATCACAGGC
R:
CGAAGTGGTGGTAAGCCTGAT
Band lengths:
173-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]